hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-00072042/chunk_1/iprscan-20080813-00072042.nocrc
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Query sequence: hk05555
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00561 pntA: NAD(P) transhydrogenase, alpha subunit   609.6   9.3e-181   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00561   1/1     107   637 ..     1   514 []   609.6 9.3e-181

Alignments of top-scoring domains:
TIGR00561: domain 1 of 1, from 107 to 637: score 609.6, E = 9.3e-181
                   *->kiGvPrelldnecrvaatPktvqqllklGfdllletgaGakasfddk
                       +GvP+e ++ne rva++P  vq l+k Gf++++e+gaG  + f+d 
     hk05555   107    TVGVPKEIFQNEKRVALSPAGVQNLVKQGFNVVVESGAGEASKFSDD 153  

                   afleaGagivdgrqtlvwqsdiilkvnaPldd......eiaelppGkalv
                    +  aGa+i  +   +v  sd+++kv+aP+  ++ + +e  +l+   +l+
     hk05555   154 HYRVAGAQIQGA--KEVLASDLVVKVRAPMVNptlgvhEADLLKTSGTLI 201  

                   sfiWpaqnPelleklaaknitvlaldavPrisraqkldalsslaniaGyr
                   sfi+paqnPell kl+ ++ tvla+d vPr++ aq  dalss+aniaGy+
     hk05555   202 SFIYPAQNPELLNKLSQRKTTVLAMDQVPRVTIAQGYDALSSMANIAGYK 251  

                   aiieaahefGrfftGqitaaGkvPPakvlviGaGvaGlaaiGaanslGai
                   a++ aa+ fGrfftGqitaaGkvPPak+l++G GvaGla+ Gaa+s+Gai
     hk05555   252 AVVLAANHFGRFFTGQITAAGKVPPAKILIVGGGVAGLASAGAAKSMGAI 301  

                   vrafdtrPevkeqveslGgefleldfkeeggggdGyakvlseefikaele
                   vr fdtr    eq +slG+e le+d+ke g g++Gyak +s+efi ae++
     hk05555   302 VRGFDTRAAALEQFKSLGAEPLEVDLKESGEGQGGYAKEMSKEFIEAEMK 351  

                   lfaaqakevdiiittaliPGkPaPkliteelvdslkaGsvivdlaaenGG
                   lfa q kevdi+i+taliPGk aP l  +e+++s+k Gsv+vdlaae GG
     hk05555   352 LFAQQCKEVDILISTALIPGKKAPVLFNKEMIESMKEGSVVVDLAAEAGG 401  

                   nceytkpGevyttengvkviGytdlPsrlptqssqlyGtnlwnllkllck
                   n e tkpGe+y  ++ ++ iGytdlPsr++tq+s ly  n+  llk +  
     hk05555   402 NFETTKPGELYIHKG-ITHIGYTDLPSRMATQASTLYSNNITKLLKAISP 450  

                   ekdGnikvdfedv........vlrGvtvvreGeitwPpp.plqppappqp
                   +k  n+  d++d  + ++ ++v+rG +v+++G++ +P+p+p ++p     
     hk05555   451 DK-DNFYFDVKDDfdfgtmghVIRGTVVMKDGKVIFPAPtPKNIPQGAPV 499  

                   akkaapvveseekspkkspwgkygwlalagil....fgwlgsgaP.tsfl
                    +k++ ++e e+  +  +p +k +  a a  ++ +++++lg+ aP+ +f 
     hk05555   500 KQKTVAELEAEKAAT-ITPFRKTMSTASAYTAgltgILGLGIAAPnLAFS 548  

                   shftvfvlacvvGyylvWnvshalhtPllsvtnaisGiiivGgllqiggp
                      t f la +vGy+ vW v++alh+Pl+svtnaisG+  vGgl  +gg 
     hk05555   549 QMVTTFGLAGIVGYHTVWGVTPALHSPLMSVTNAISGLTAVGGLALMGGH 598  

                   gg..lpvtflgfiailvgsinifGGflvtqrllklfrkg<-*
                   + ++     l+++a  ++s+ni+GGflvtqr+l +f++    
     hk05555   599 LYpsTTSQGLAALAAFISSVNIAGGFLVTQRMLDMFKRP    637  

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