hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-00300961/chunk_1/iprscan-20080813-00300961.nocrc
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Query sequence: hk06194
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00404                                                  25.5    0.00047   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00404    1/1     266   434 ..     1    92 []    25.5  0.00047

Alignments of top-scoring domains:
SM00404: domain 1 of 1, from 266 to 434: score 25.5, E = 0.00047
                   *->tvkhyhytgWpDhvekdsgvPe.........................
                      +  ++++ g  +      +v  ++ ++  + +++++ + ++  ++ +
     hk06194   266    SNIRFQFVGIENI-----HVMRsslqkllevngtkglsvndfysgle 307  

                   .dsileflravrk..............PivVHCSAGvGRTGtfvaidill
                   +++ l++++av++      +  + ++ +++VHCS+G++RT +++++ +ll
     hk06194   308 sSGWLRHIKAVMDaavflakaitvenaSVLVHCSDGWDRTSQVCSLGSLL 357  

                   qq..........................................vdifdt
                    ++  ++ ++     +++  + +++ +++ ++ ++++++ ++    ++++
     hk06194   358 LDsyyrtikgfmvliekdwisfghkfsercgqldgdpkevspvfTQFLEC 407  

                   vkelRsqRpgmvqteeQYlFlyralle<-*
                   v++l +q p++++  e +l  ++ ++    
     hk06194   408 VWHLTEQFPQAFEFSEAFLLQIHEHIH    434  

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