hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-00353745/chunk_1/iprscan-20080813-00353745.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk06295 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00676.10.ls Dehydrogenase E1 component 507.8 1.1e-149 1 PF00676.10.fs Dehydrogenase E1 component 505.8 4.6e-149 1 PF02779.14.fs Transketolase, pyrimidine binding domain 238.5 8.4e-70 1 PF02779.14.ls Transketolase, pyrimidine binding domain 240.5 3.4e-69 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00676.10.fs 1/1 282 608 .. 1 327 [] 505.8 4.6e-149 PF00676.10.ls 1/1 282 608 .. 1 327 [] 507.8 1.1e-149 PF02779.14.fs 1/1 675 892 .. 1 189 [] 238.5 8.4e-70 PF02779.14.ls 1/1 675 892 .. 1 189 [] 240.5 3.4e-69 Alignments of top-scoring domains: PF00676.10.fs: domain 1 of 1, from 282 to 608: score 505.8, E = 4.6e-149 *->yrmmllrRmedarmalykrkgirGFyhlyaGqEAlqvGiaaAldkgv +r+++++R+e+++++++++++++G++++++ ++Al+++i++++++gv hk06295 282 ARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSENGV 328 DyviptmPYRdhgvllarGvsk.leevlaelyGreaGcskGkGGSmhmpg Dyvi++mP+R++ ++la++++k+le+++++++++ +++++G+G++++++g hk06295 329 DYVIMGMPHRGRLNVLANVIRKeLEQIFCQFDSKLEAADEGSGDVKYHLG 378 yygpknnrfyggngivgaqaqvpipaAvGiAlAakekreQfyvgdyrgkk +y++++nr++++n++++++a++++ +A+++++++k+k+eQfy+gd++gkk hk06295 379 MYHRRINRVTDRNITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKK 428 evaitlfGDGAFtnqGqffEalNfAalwklPvgGaIFvceNNqyAisTpa +++i+l+GD+AF++qG+++E++++++l++++++G+++v++NNq++++T++ hk06295 429 VMSILLHGDAAFAGQGIVYETFHLSDLPSYTTHGTVHVVVNNQIGFTTDP 478 erssasteyadrArGygIPgirVDGmDplAVyqAvKeAaerAreGkGPtL +++++s++++d+Ar++++P+++V++ Dp+AV++++K+Aae++++++++++ hk06295 479 RMARSSPYPTDVARVVNAPIFHVNSGDPEAVMYVCKVAAEWRSTFHKDVV 528 IElvTYRygGHsmsDdpstYRtreeveevrkkkDPikrlkkhLvskGlvs ++lv+YR++GH+++D+p++++ + +++++rk+k+++++++++Lvs+G+v+ hk06295 529 VDLVCYRRNGHNEMDEPMFTQ-PLMYKQIRKQKPVLQKYAELLVSQGVVN 577 eeElkeiekevrkeieeAvkkAesapepnpe<-* ++E++e++++++k++eeA+++++++++++++ hk06295 578 QPEYEEEISKYDKICEEAFARSKDEKILHIK 608 PF00676.10.ls: domain 1 of 1, from 282 to 608: score 507.8, E = 1.1e-149 *->yrmmllrRmedarmalykrkgirGFyhlyaGqEAlqvGiaaAldkgv +r+++++R+e+++++++++++++G++++++ ++Al+++i++++++gv hk06295 282 ARLVRSTRFEEFLQRKWSSEKRFGLEGCEVLIPALKTIIDKSSENGV 328 DyviptmPYRdhgvllarGvsk.leevlaelyGreaGcskGkGGSmhmpg Dyvi++mP+R++ ++la++++k+le+++++++++ +++++G+G++++++g hk06295 329 DYVIMGMPHRGRLNVLANVIRKeLEQIFCQFDSKLEAADEGSGDVKYHLG 378 yygpknnrfyggngivgaqaqvpipaAvGiAlAakekreQfyvgdyrgkk +y++++nr++++n++++++a++++ +A+++++++k+k+eQfy+gd++gkk hk06295 379 MYHRRINRVTDRNITLSLVANPSHLEAADPVVMGKTKAEQFYCGDTEGKK 428 evaitlfGDGAFtnqGqffEalNfAalwklPvgGaIFvceNNqyAisTpa +++i+l+GD+AF++qG+++E++++++l++++++G+++v++NNq++++T++ hk06295 429 VMSILLHGDAAFAGQGIVYETFHLSDLPSYTTHGTVHVVVNNQIGFTTDP 478 erssasteyadrArGygIPgirVDGmDplAVyqAvKeAaerAreGkGPtL +++++s++++d+Ar++++P+++V++ Dp+AV++++K+Aae++++++++++ hk06295 479 RMARSSPYPTDVARVVNAPIFHVNSGDPEAVMYVCKVAAEWRSTFHKDVV 528 IElvTYRygGHsmsDdpstYRtreeveevrkkkDPikrlkkhLvskGlvs ++lv+YR++GH+++D+p++++ + +++++rk+k+++++++++Lvs+G+v+ hk06295 529 VDLVCYRRNGHNEMDEPMFTQ-PLMYKQIRKQKPVLQKYAELLVSQGVVN 577 eeElkeiekevrkeieeAvkkAesapepnpe<-* ++E++e++++++k++eeA+++++++++++++ hk06295 578 QPEYEEEISKYDKICEEAFARSKDEKILHIK 608 PF02779.14.fs: domain 1 of 1, from 675 to 892: score 238.5, E = 8.4e-70 *->kkiatrkAsgeALaelaeedprvvgggaDvgaygGtftvtkgllhpq ++++++ A+ +A+++l++e+ +++++g+Dv+ +Gtf++++++lh+q hk06295 675 RTVDWALAEYMAFGSLLKEGIHIRLSGQDVE--RGTFSHRHHVLHDQ 719 g.................egRvidtgiaEqamvgianGmAlhGpnllppv ++++ + ++ +++ ++ v+++ ++E++++g++ G A++ pn+l+ + hk06295 720 NvdkrtcipmnhlwpnqaPYTVCNSSLSEYGVLGFELGFAMASPNALVLW 769 eatFgdFanpAfdQiyadaairryaalgklpvpfvvtrdpiGvGedGPtH ea+FgdF n ++Q+++d++i+ + a++ ++ + +v ++p+G ++ GP+H hk06295 770 EAQFGDFHN--TAQCIIDQFICPGQAKWVRQNG-IVLLLPHGMEGMGPEH 816 qsqedeaylraiPg..................e.nNlkVvrPsdpaetkg +s+++e++l++++ +++ ++ ++ + + ++ +++N+ Vv++s+p + ++ hk06295 817 SSARPERFLQMCNDdpdvlpdlkeanfdinqlYdCNWVVVNCSTPGNFFH 866 lLraAirsdrddrdPvvlrlprqllrhk<-* Lr++i +++r+P+++++p++llrh+ hk06295 867 VLRRQIL--LPFRKPLIIFTPKSLLRHP 892 PF02779.14.ls: domain 1 of 1, from 675 to 892: score 240.5, E = 3.4e-69 *->kkiatrkAsgeALaelaeedprvvgggaDvgaygGtftvtkgllhpq ++++++ A+ +A+++l++e+ +++++g+Dv+ +Gtf++++++lh+q hk06295 675 RTVDWALAEYMAFGSLLKEGIHIRLSGQDVE--RGTFSHRHHVLHDQ 719 g.................egRvidtgiaEqamvgianGmAlhGpnllppv ++++ + ++ +++ ++ v+++ ++E++++g++ G A++ pn+l+ + hk06295 720 NvdkrtcipmnhlwpnqaPYTVCNSSLSEYGVLGFELGFAMASPNALVLW 769 eatFgdFanpAfdQiyadaairryaalgklpvpfvvtrdpiGvGedGPtH ea+FgdF n ++Q+++d++i+ + a++ ++ + +v ++p+G ++ GP+H hk06295 770 EAQFGDFHN--TAQCIIDQFICPGQAKWVRQNG-IVLLLPHGMEGMGPEH 816 qsqedeaylraiPg..................e.nNlkVvrPsdpaetkg +s+++e++l++++ +++ ++ ++ + + ++ +++N+ Vv++s+p + ++ hk06295 817 SSARPERFLQMCNDdpdvlpdlkeanfdinqlYdCNWVVVNCSTPGNFFH 866 lLraAirsdrddrdPvvlrlprqllrhk<-* Lr++i +++r+P+++++p++llrh+ hk06295 867 VLRRQIL--LPFRKPLIIFTPKSLLRHP 892 //