hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-00473622/chunk_1/iprscan-20080813-00473622.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk06640y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 553.3 9.8e-162 1 SM00248 122.6 4.3e-32 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00248 1/5 117 146 .. 1 30 [] 20.2 0.29 SM00248 2/5 150 179 .. 1 30 [] 27.2 0.0023 SM00248 3/5 183 214 .. 1 30 [] 7.1 5.2e+02 SM00248 4/5 246 275 .. 1 30 [] 34.5 1.5e-05 SM00248 5/5 279 308 .. 1 30 [] 33.7 2.6e-05 SM00242 1/1 423 1171 .. 1 771 [] 553.3 9.8e-162 Alignments of top-scoring domains: SM00248: domain 1 of 5, from 117 to 146: score 20.2, E = 0.29 *->dGrTpLHlAaengnlevvklLldkgadina<-* G + LHl+a+++n ++++L+d+g+++n hk06640y2 117 SGGSLLHLCARYDNAFIAEILIDRGVNVNH 146 SM00248: domain 2 of 5, from 150 to 179: score 27.2, E = 0.0023 *->dGrTpLHlAaengnlevvklLldkgadina<-* d +Tp+H+A++ +n+++v lL+ +ga++ + hk06640y2 150 DFWTPMHIACACDNPDIVLLLVLAGANVLL 179 SM00248: domain 3 of 5, from 183 to 214: score 7.1, E = 5.2e+02 *->dGrTpLHlAaen..gnlevvklLldkgadina<-* +G+ pL +A+e ++ + ++ +L ++g+d++ hk06640y2 183 NGNIPLDYAVEGteSSSILLTYLDENGVDLTS 214 SM00248: domain 4 of 5, from 246 to 275: score 34.5, E = 1.5e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G T LH+A+++g++evv l+l++g+d+n+ hk06640y2 246 EGVTLLHMACASGYKEVVSLILEHGGDLNI 275 SM00248: domain 5 of 5, from 279 to 308: score 33.7, E = 2.6e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* + +TpLHlAa++g+ ++vklLl + a++++ hk06640y2 279 QYWTPLHLAAKYGQTNLVKLLLMHQANPHL 308 SM00242: domain 1 of 1, from 423 to 1171: score 553.3, E = 9.8e-162 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav + p+++ +D+++L+ Ln+ ++l+ +kR+ +++IYT+iG++L v hk06640y2 423 MPPAPN---DDLATLSELNDGSLLYEIQKRFGNNQIYTFIGDILLLV 466 NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre NPYk+l piY+ v ++Y + +Gk + lpPH+F+ ++A+++++re hk06640y2 467 NPYKEL-PIYSSMVSQLYFSS---SGKLCSSLPPHLFSCVERAFHQLFRE 512 keNQsIiISGESGAGKTEatKkimqYLAavsg.....svesvedqiLesN ++ Q+ i SGE G+GK+Ea+K+i+++L+ +g ++ + +++ ++++ hk06640y2 513 QRPQCFILSGERGSGKSEASKQIIRHLTCRAGasratLDSRFKHVVC--- 559 PiLEAFGNAKTvRNnNSSRFGKfieIhFdekG.kivGAkIenYLLEKSRV iLEAFG AKT+ N+ SS F K++e++F e + ++GA I++YLLEKSR hk06640y2 560 -ILEAFGHAKTTLNDLSSCFIKYFELQFCERKqQLTGARIYTYLLEKSRL 608 VsQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpf VsQ+ g N+ IFY L+ G+s+e+k l+L ++ +YLnq hk06640y2 609 VSQPLGQSNFLIFYLLMDGLSAEEKYGLHLN----NLCAHRYLNQ----- 649 ankryssgcltvd.giD....DaeeFkeTdEvtlkAmrvlGfseeEqesI ++++d + +++ e + +++A++v+Gfs E+e+ hk06640y2 650 --------TIQDDaSTGerslNREKLAV----LKRALNVVGFSSLEVENL 687 FrilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpe F ilAAILHLG i+F++ ++ +n+a v+d + l+ +A +L+v+++ hk06640y2 688 FVILAAILHLGDIRFTALNE--GNSAF----VSDLQLLEQVAGMLQVSTD 731 eLekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLV eL aLt+ + +g+ i++ ++ + A++ RD LAK +YsRLF++LV hk06640y2 732 ELASALTTDIQYFKGD---MIIRRHTIQIAEFFRDLLAKSLYSRLFSFLV 778 krINksl.........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQ + N+ l++++++++ +++ IG+LDI+GFE F+kN FEQ+C N +NEK+ hk06640y2 779 NTMNSCLhsqdeqksmQTLDIGILDIFGFEEFQKNEFEQLCVNMTNEKMH 828 QfFnqhvFKlEQEEYerEGIeWtfIdFfliDNQ.pciDLIEkKgkrPlGI + n+ F EQ E ++EG+ + + NQ+ ++D +K P G hk06640y2 829 HYINEVLFLHEQVECVQEGVTME-TAYSA-GNQnGVLDFFFQK---PSGF 873 lslLDEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkS.lkk l+lLDEe+ + + ++F KL++ l +++++ + S+ k hk06640y2 874 LTLLDEESQM---IWSVESNFPKKLQSLL----ESSNTNAVY---SpMKD 913 .gkp.kkrfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSk + + +++ taF+i HYAG+V Y+v G +eKNkD L+++l+ ++++S hk06640y2 914 gNGNvALKDHGTAFTIMHYAGRVMYDVVGAIEKNKDSLSQNLLFVMKTSE 963 npliasLFpeeadqsssaakekss.ggagksrkagr.r.epsk....... n +i LF++ +q++s ++ s ++ g +++ ++ ++s+ +++++ hk06640y2 964 NVVINHLFQSKLSQTGSLVSAYPSfKFRGHKSALLSkKmTASSiigenkn 1013 ....................gtisskkrppTvGsqFk.sLneLmetLnst + ++ +++++++ ++ ++ p T++sq ++sL + + +L ++ hk06640y2 1014 ylelskllkkkgtstflqrlE----RGDPVTIASQLRkSLMDIIGKLQKC 1059 nPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFPyRlpf +PHFI CI+PN+ K+p +Fd+ V QL+y GvLE ++I r G+P+Rl+f hk06640y2 1060 TPHFIHCIRPNNSKLPDTFDNFYVSAQLQYIGVLEMVKIFRYGYPVRLSF 1109 deFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglgiegdnl ++Fl RYk l++t + ++e ++a + c+++Lq+++ hk06640y2 1110 SDFLSRYK-PLADTFLREKKE------QSAAERCRLVLQQCK-------- 1144 deeeyqiGkTKvFlRnpgqlaeLEelRee<-* +++q+G KvFl+ + + L +l + hk06640y2 1145 -LQGWQMGVRKVFLK-YWHADQLNDLCLQ 1171 //