hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-01000815/chunk_1/iprscan-20080813-01000815.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk07106 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 280.8 2.5e-81 7 PF00028.8.ls Cadherin domain 276.6 4.6e-80 5 PF08266.2.fs Cadherin-like 48.9 8.5e-14 3 PF08266.2.ls Cadherin-like 41.3 1.1e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.ls 1/1 41 125 .. 1 84 [] 41.3 1.1e-09 PF08266.2.fs 2/3 89 125 .. 48 84 .] 34.4 1.6e-09 PF00028.8.fs 2/7 151 246 .. 1 107 [] 45.7 1.7e-12 PF00028.8.ls 1/5 151 246 .. 1 107 [] 47.6 3.9e-11 PF00028.8.ls 2/5 260 354 .. 1 107 [] 81.3 2.8e-21 PF00028.8.fs 3/7 260 354 .. 1 107 [] 79.5 3.6e-22 PF00028.8.fs 4/7 370 462 .. 1 107 [] 47.2 6.5e-13 PF00028.8.ls 3/5 370 462 .. 1 107 [] 49.0 1.4e-11 PF00028.8.fs 5/7 476 567 .. 1 107 [] 72.7 3.1e-20 PF00028.8.ls 4/5 476 567 .. 1 107 [] 74.6 3e-19 PF00028.8.ls 5/5 618 708 .. 1 107 [] 24.1 0.00047 PF00028.8.fs 6/7 629 669 .. 15 61 .. 25.5 1.1e-06 Alignments of top-scoring domains: PF08266.2.ls: domain 1 of 1, from 41 to 125: score 41.3, E = 1.1e-09 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaR.gaRivSggnkqy ++ Y V+EE+++G+++G l + LG + ++ a +++ hk07106 41 LTVKYQVSEEVPSGTVIGKLSQELGREERRRQAGaAFQVLQLPQALP 87 FqlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* q+++e G L + R+DRE+LC q +pC+++++vl hk07106 88 IQVDSEEGLLSTGRRLDREQLCRQWDPCLVSFDVLATG 125 PF08266.2.fs: domain 2 of 3, from 89 to 125: score 34.4, E = 1.6e-09 *->qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* q+++e G L + R+DRE+LC q +pC+++++vl hk07106 89 QVDSEEGLLSTGRRLDREQLCRQWDPCLVSFDVLATG 125 PF00028.8.fs: domain 2 of 7, from 151 to 246: score 45.7, E = 1.7e-12 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ +++E a+ t++ +A D+D +gpN+ +Y +++ + +F+ hk07106 151 QELEISESASLRTRIPLDRALDPD--TGPNTLHTYTLSPSE---HFA 192 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp +d G +e + ++ ++k+LDRE + + L++ A D+ g p hk07106 193 LDVIVGPDETKhaeLIVVKELDREIH--SFFDLVLTAYDN-------GNP 233 plsstatvtitVl<-* p+s+t v ++Vl hk07106 234 PKSGTSLVKVNVL 246 PF00028.8.ls: domain 1 of 5, from 151 to 246: score 47.6, E = 3.9e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ +++E a+ t++ +A D+D +gpN+ +Y +++ + +F+ hk07106 151 QELEISESASLRTRIPLDRALDPD--TGPNTLHTYTLSPSE---HFA 192 IdpdtGdnegi...isttkpLDREeifngeYeLtveAtDadpllasgggp +d G +e + ++ ++k+LDRE + + L++ A D+ g p hk07106 193 LDVIVGPDETKhaeLIVVKELDREIH--SFFDLVLTAYDN-------GNP 233 plsstatvtitVl<-* p+s+t v ++Vl hk07106 234 PKSGTSLVKVNVL 246 PF00028.8.ls: domain 2 of 5, from 260 to 354: score 81.3, E = 2.8e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg ++ E+a++Gt ++ +tAtD+D +gpNg + ++++++ p++ + hk07106 260 LALEIQEDAAPGTLLIKLTATDPD--QGPNGEVEFFLSKHMPpevLD 304 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F+Id +tG+ + +++pLD+E+ + Ye+ v A+D g+ hk07106 305 TFSIDAKTGQ----VILRRPLDYEKN--PAYEVDVQARDL-------GPN 341 plsstatvtitVl<-* p + + v i+Vl hk07106 342 PIPAHCKVLIKVL 354 PF00028.8.fs: domain 3 of 7, from 260 to 354: score 79.5, E = 3.6e-22 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg ++ E+a++Gt ++ +tAtD+D +gpNg + ++++++ p++ + hk07106 260 LALEIQEDAAPGTLLIKLTATDPD--QGPNGEVEFFLSKHMPpevLD 304 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F+Id +tG+ + +++pLD+E+ + Ye+ v A+D g+ hk07106 305 TFSIDAKTGQ----VILRRPLDYEKN--PAYEVDVQARDL-------GPN 341 plsstatvtitVl<-* p + + v i+Vl hk07106 342 PIPAHCKVLIKVL 354 PF00028.8.fs: domain 4 of 7, from 370 to 462: score 47.2, E = 6.5e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ v+E p ++++ v A D D +g Ng ++ +++ g+Fr hk07106 370 QPSLVSEALPKDSFIALVMADDLD--SGHNGLVHCWLSQEL--GHFR 412 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + + t+ n+ ++ t + LDRE+ ++Y+Lt++A+D+ g +pls hk07106 413 LKR-TNGNTYMLLTNATLDREQW--PKYTLTLLAQDQ-------GLQPLS 452 statvtitVl<-* + ++ i++ hk07106 453 AKKQLSIQIS 462 PF00028.8.ls: domain 3 of 5, from 370 to 462: score 49.0, E = 1.4e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ++ v+E p ++++ v A D D +g Ng ++ +++ g+Fr hk07106 370 QPSLVSEALPKDSFIALVMADDLD--SGHNGLVHCWLSQEL--GHFR 412 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls + + t+ n+ ++ t + LDRE+ ++Y+Lt++A+D+ g +pls hk07106 413 LKR-TNGNTYMLLTNATLDREQW--PKYTLTLLAQDQ-------GLQPLS 452 statvtitVl<-* + ++ i++ hk07106 453 AKKQLSIQIS 462 PF00028.8.fs: domain 5 of 7, from 476 to 567: score 72.7, E = 3.1e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y++s +En + +++t++A+DaD lg Ng+++Y+i ++++ + hk07106 476 YEVSTRENNLPSLHLITIKAHDAD--LGINGKVSYRIQDSPVAHLVA 520 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Id++tG+ ++ +++L++Ee+ +e+ v+A D+ g+p l hk07106 521 IDSNTGE----VTAQRSLNYEEM--AGFEFQVIAEDS-------GQPMLA 557 statvtitVl<-* s ++v++++l hk07106 558 SSVSVWVSLL 567 PF00028.8.ls: domain 4 of 5, from 476 to 567: score 74.6, E = 3e-19 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr y++s +En + +++t++A+DaD lg Ng+++Y+i ++++ + hk07106 476 YEVSTRENNLPSLHLITIKAHDAD--LGINGKVSYRIQDSPVAHLVA 520 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Id++tG+ ++ +++L++Ee+ +e+ v+A D+ g+p l hk07106 521 IDSNTGE----VTAQRSLNYEEM--AGFEFQVIAEDS-------GQPMLA 557 statvtitVl<-* s ++v++++l hk07106 558 SSVSVWVSLL 567 PF00028.8.ls: domain 5 of 5, from 618 to 708: score 24.1, E = 0.00047 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + a+ + + ++t+ A+DaD +g+Ng + Ysi +gn+++ F hk07106 618 PLATHSSR---PFLLTTIVARDAD--SGANGEPLYSIRNGNEAHLFI 659 IdpdtGdnegiisttkpLDREeif.....ngeYeLtveAtDadpllasgg ++p+tG+ +++ ++ ++ +e eL +++ D+ g hk07106 660 LNPHTGQ----LFVN------VTNassliGSEWELEIVVEDQ-------G 692 gpplsstatvti.tVl<-* +ppl ++a +++ V+ hk07106 693 SPPLQTRALLRVmFVT 708 PF00028.8.fs: domain 6 of 7, from 629 to 669: score 25.5, E = 1.1e-06 *->vltvtAtDaDdPlgpNgrirYsilggnpggwFrIdpdtGdnegiist ++t+ A+DaD +g+Ng + Ysi +gn+++ F ++p+tG+ +++ hk07106 629 LTTIVARDAD--SGANGEPLYSIRNGNEAHLFILNPHTGQ----LFV 669 <-* hk07106 - - //