hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-01000815/chunk_1/iprscan-20080813-01000815.nocrc
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Query sequence: hk07106
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 412.2   2.8e-119   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      47   144 ..     1   121 []    13.2     0.12
SM00112    2/6     168   253 ..     1   121 []    75.1  8.6e-18
SM00112    3/6     277   361 ..     1   121 []   103.5  2.4e-26
SM00112    4/6     387   469 ..     1   121 []    92.7  4.4e-23
SM00112    5/6     493   574 ..     1   121 []   102.0  7.1e-26
SM00112    6/6     632   715 ..     1   121 []    25.7   0.0062

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 47 to 144: score 13.2, E = 0.12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..................
                      vs   +     +  gk      ++ ++ +++++++ +   +  + ++
     hk07106    47    VSEEVPSG---TVIGK------LSQELGReerrrqagaafqvlqlpq 84   

                   ..lFsIdpetGtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLt
                     + ++d+e G            ++t ++LDRE+ +         +    
     hk07106    85 alPIQVDSEEG-----------LLSTGRRLDREQLC--------RQWDPC 115  

                   veAtDgGgpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                    +  D                      +   v ++VlD+ND+ P   
     hk07106   116 LVSFDVLATG---------------DLALIHVEIQVLDINDHQP    144  

SM00112: domain 2 of 6, from 168 to 253: score 75.1, E = 8.6e-18
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                       +A D+D+g   +N         tY+++++++  l  I     t+++
     hk07106   168    DRALDPDTG---PNTL------HTYTLSPsehfaLDVIVGPDETKHA 205  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++++k+LDRE +         s + L+ +A D+G+pp     
     hk07106   206 -------ELIVVKELDREIH---------SFFDLVLTAYDNGNPP----- 234  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +s+t+ v v+VlD NDN P   
     hk07106   235 ----------KSGTSLVKVNVLDSNDNSP    253  

SM00112: domain 3 of 6, from 277 to 361: score 103.5, E = 2.4e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      ++AtD+D+g   +Ng+      v++ ++ + +++  + FsId++tG 
     hk07106   277    LTATDPDQG---PNGE------VEFFLSKhmppevldTFSIDAKTG- 313  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                             ++++++pLD+E+          + Y++ v+A+D G++p  
     hk07106   314 ----------QVILRRPLDYEKN---------PAYEVDVQARDLGPNP-- 342  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  +++ v ++VlDvNDN P   
     hk07106   343 -------------IPAHCKVLIKVLDVNDNIP    361  

SM00112: domain 4 of 6, from 387 to 469: score 92.7, E = 4.4e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      v A D+Dsg   +Ng       v++ ++++ ++F++ +++G+     
     hk07106   387    VMADDLDSG---HNGL------VHCWLSQelgHFRLKRTNGN----- 419  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                       + + t+++LDRE+          ++YtLt  A+D+G +p       
     hk07106   420 ---TYMLLTNATLDREQW---------PKYTLTLLAQDQGLQP------- 450  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                           ls+  ++ +++ D+NDNaP   
     hk07106   451 --------LSAKKQLSIQISDINDNAP    469  

SM00112: domain 5 of 6, from 493 to 574: score 102.0, E = 7.1e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      ++A+DaD g    Ngk      v+Y+i +++  +l +Id++tG    
     hk07106   493    IKAHDADLG---INGK------VSYRIQDspvahLVAIDSNTG---- 526  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++t++++L++Ee+         + ++++v+A D+G+p      
     hk07106   527 -------EVTAQRSLNYEEM---------AGFEFQVIAEDSGQPM----- 555  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             l s+++v v +lD NDNaP   
     hk07106   556 ----------LASSVSVWVSLLDANDNAP    574  

SM00112: domain 6 of 6, from 632 to 715: score 25.7, E = 0.0062
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      ++A+DaDsg    Ng+        Ysi ++++ +lF ++p+tG    
     hk07106   632    IVARDADSG---ANGE------PLYSIRNgneahLFILNPHTG---- 665  

                   sLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                          +++++        +         se +L++++ D+G+pp    
     hk07106   666 -------QLFVNvTNASSLIG---------SEWELEIVVEDQGSPP---- 695  

                   sptrksqqtpplsstatvtv.tVlDvNDNaP<-*
                              l++ a ++v +V+ v+  +    
     hk07106   696 -----------LQTRALLRVmFVTSVDHLRD    715  

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