hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-16443559/chunk_1/iprscan-20090618-16443559.nocrc
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Query sequence: hk07120
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05760.2.fs Immediate early response protein (IER)         412.9     8e-138   1
PF05760.2.ls Immediate early response protein (IER)         414.5   1.4e-121   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05760.2.fs   1/1      31   253 .]     1   431 []   412.9   8e-138
PF05760.2.ls   1/1      31   253 .]     1   431 []   414.5 1.4e-121

Alignments of top-scoring domains:
PF05760.2.fs: domain 1 of 1, from 31 to 253: score 412.9, E = 8e-138
                   *->MEvklEAqRImSISLgKIYnSRvQRGGIKLHKNLLVSLVLRSARqlY
                      MEv++EAqRIm++S++K+Y+SR+QRGG++LH++L++SLV+RSAR+lY
     hk07120    31    MEVQKEAQRIMTLSVWKMYHSRMQRGGLRLHRSLQLSLVMRSARELY 77   

                   LSdkypgLYlagqagtpaqPPheqeghlaaapPSgwgepPPsaaraddpe
                   LS+k+++L              e+e++l+aa+PS             dp+
     hk07120    78 LSAKVEAL--------------EPEVSLPAALPS-------------DPR 100  

                   lggggdpqPeePsvrhqLHqLHqLHqLHLqqqLHqHqHPAPreaesapva
                   l              h+                       Preaes    
     hk07120   101 L--------------HP-----------------------PREAES---- 109  

                   aVaGagaglaGgesElaeaaaeqpEhprdtsgeeleslqggpalfpeppr
                                  +ae+a++++Ehp                 fpep++
     hk07120   110 ---------------TAETATPDGEHP-----------------FPEPMD 127  

                   aaerPcdcrvaeedSaPsVlPgAaPstvaAsrssedtaPspsavFYRGAY
                   ++e+P+    aee+                   s+++aP+p++v      
     hk07120   128 TQEAPT----AEET-------------------SACCAPRPAKV------ 148  

                   PAPSDFGVHCSSqttVLDLDtHVVttVENGYLHqDlCpskrCaagvgGas
                                                        ++kr       +s
     hk07120   149 -------------------------------------SRKR-------RS 154  

                   aeesasgatGLvpkkKprRNvessPlqeEedeeEeaGDLGAEPPGGtPFA
                   +++s++g++GLvp+kK+r        +eE++eeE+a              
     hk07120   155 SSLSDGGDAGLVPSKKAR--------LEEKEEEEGA-------------- 182  

                   PCKrarveD.lcPdsspdtGNvsNLIsIfGSsFSGLLskSPAGGREEEep
                      +++v+D+l+P++++++G+++NL+++++++FSGLL++SPA       +
     hk07120   183 ---SSEVADrLQPPPAQAEGAFPNLARVLQRRFSGLLNCSPA-------A 222  

                   eesepeApepgqiCRPadqPaLndLnpWsrAIVAF<-*
                   ++++p+A+e++++CRPad+ +Ln+L   +rA+VAF   
     hk07120   223 PPTAPPACEAKPACRPADS-MLNVL---VRAVVAF    253  

PF05760.2.ls: domain 1 of 1, from 31 to 253: score 414.5, E = 1.4e-121
                   *->MEvklEAqRImSISLgKIYnSRvQRGGIKLHKNLLVSLVLRSARqlY
                      MEv++EAqRIm++S++K+Y+SR+QRGG++LH++L++SLV+RSAR+lY
     hk07120    31    MEVQKEAQRIMTLSVWKMYHSRMQRGGLRLHRSLQLSLVMRSARELY 77   

                   LSdkypgLYlagqagtpaqPPheqeghlaaapPSgwgepPPsaaraddpe
                   LS+k+++L              e+e++l+aa+PS             dp+
     hk07120    78 LSAKVEAL--------------EPEVSLPAALPS-------------DPR 100  

                   lggggdpqPeePsvrhqLHqLHqLHqLHLqqqLHqHqHPAPreaesapva
                   l              h+                       Preaes    
     hk07120   101 L--------------HP-----------------------PREAES---- 109  

                   aVaGagaglaGgesElaeaaaeqpEhprdtsgeeleslqggpalfpeppr
                                  +ae+a++++Ehp                 fpep++
     hk07120   110 ---------------TAETATPDGEHP-----------------FPEPMD 127  

                   aaerPcdcrvaeedSaPsVlPgAaPstvaAsrssedtaPspsavFYRGAY
                   ++e+P+    aee+                   s+++aP+p++v      
     hk07120   128 TQEAPT----AEET-------------------SACCAPRPAKV------ 148  

                   PAPSDFGVHCSSqttVLDLDtHVVttVENGYLHqDlCpskrCaagvgGas
                                                        ++kr       +s
     hk07120   149 -------------------------------------SRKR-------RS 154  

                   aeesasgatGLvpkkKprRNvessPlqeEedeeEeaGDLGAEPPGGtPFA
                   +++s++g++GLvp+kK+r        +eE++eeE+a              
     hk07120   155 SSLSDGGDAGLVPSKKAR--------LEEKEEEEGA-------------- 182  

                   PCKrarveD.lcPdsspdtGNvsNLIsIfGSsFSGLLskSPAGGREEEep
                      +++v+D+l+P++++++G+++NL+++++++FSGLL++SPA       +
     hk07120   183 ---SSEVADrLQPPPAQAEGAFPNLARVLQRRFSGLLNCSPA-------A 222  

                   eesepeApepgqiCRPadqPaLndLnpWsrAIVAF<-*
                   ++++p+A+e++++CRPad+ +Ln+L   +rA+VAF   
     hk07120   223 PPTAPPACEAKPACRPADS-MLNVL---VRAVVAF    253  

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