hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-01060629/chunk_1/iprscan-20080813-01060629.nocrc
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Query sequence: hk07193
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF04433.7.ls    SWIRM domain                            102.4    1.2e-27   1
PF04433.7.fs    SWIRM domain                            100.5    4.7e-27   1
PF00249.21.fs   Myb-like DNA-binding domain              47.9    4.1e-12   1
PF00249.21.ls   Myb-like DNA-binding domain              49.6    9.5e-12   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00249.21.fs     1/1      73   119 ..     1    65 []    47.9  4.1e-12
PF00249.21.ls     1/1      73   119 ..     1    65 []    49.6  9.5e-12
PF04433.7.fs      1/1     357   443 ..     1    95 []   100.5  4.7e-27
PF04433.7.ls      1/1     357   443 ..     1    95 []   102.4  1.2e-27

Alignments of top-scoring domains:
PF00249.21.fs: domain 1 of 1, from 73 to 119: score 47.9, E = 4.1e-12
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                       ++Wta+E+  l+eav+  G g          nW+ +a+++      
     hk07193    73    DPSWTAQEEMALLEAVMDCGFG----------NWQDVANQMC----- 104  

                   nvlgrtaeqcklryykyk<-*
                      ++t+e+c  +y k++   
     hk07193   105 ---TKTKEECEKHYMKHF    119  

PF00249.21.ls: domain 1 of 1, from 73 to 119: score 49.6, E = 9.5e-12
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                       ++Wta+E+  l+eav+  G g          nW+ +a+++      
     hk07193    73    DPSWTAQEEMALLEAVMDCGFG----------NWQDVANQMC----- 104  

                   nvlgrtaeqcklryykyk<-*
                      ++t+e+c  +y k++   
     hk07193   105 ---TKTKEECEKHYMKHF    119  

PF04433.7.fs: domain 1 of 1, from 357 to 443: score 100.5, E = 4.7e-27
                   *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns
                      + ++++a++l+l++l++ E+l+e+E++l++++  r++p +YL+++ +
     hk07193   357    NSGRRSAPPLNLTGLPGTEKLNEKEKELCQMV--RLVPGAYLEYKSA 401  

                   iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<-
                   ++  +++n++++l+  +ar+++++    Dvn+ +++ydFL r+GyI    
     hk07193   402 LL--NECNKQGGLRLAQARALIKI----DVNKTRKIYDFLIREGYITK   443  

                   *
                    
     hk07193     -   -    

PF04433.7.ls: domain 1 of 1, from 357 to 443: score 102.4, E = 1.2e-27
                   *->lkeasyaswldlsaltpiEllsepEfflgktlsgrktpevYLviRns
                      + ++++a++l+l++l++ E+l+e+E++l++++  r++p +YL+++ +
     hk07193   357    NSGRRSAPPLNLTGLPGTEKLNEKEKELCQMV--RLVPGAYLEYKSA 401  

                   iislwrlnptkyltktdarrnlagpfnsDvnlvsrvydFLerwGyINy<-
                   ++  +++n++++l+  +ar+++++    Dvn+ +++ydFL r+GyI    
     hk07193   402 LL--NECNKQGGLRLAQARALIKI----DVNKTRKIYDFLIREGYITK   443  

                   *
                    
     hk07193     -   -    

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