hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-01304597/chunk_1/iprscan-20080813-01304597.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk07299y1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 1126.3 0 1 PF00063.11.fs Myosin head (motor domain) 1124.4 0 1 PF06017.4.ls Myosin tail 280.3 3.6e-81 1 PF06017.4.fs Myosin tail 278.4 1.3e-80 1 PF00018.18.ls SH3 domain 82.4 1.3e-21 1 PF00018.18.fs SH3 domain 80.5 3e-21 1 PF07653.7.fs Variant SH3 domain 52.8 1.5e-14 1 PF07653.7.ls Variant SH3 domain 54.5 3.2e-13 1 PF00612.17.ls IQ calmodulin-binding motif 16.7 0.081 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.ls 1/1 70 728 .. 1 791 [] 1126.3 0 PF00063.11.fs 1/1 70 728 .. 1 791 [] 1124.4 0 PF00612.17.ls 1/1 745 765 .. 1 21 [] 16.7 0.081 PF06017.4.fs 1/1 767 969 .. 1 242 [] 278.4 1.3e-80 PF06017.4.ls 1/1 767 969 .. 1 242 [] 280.3 3.6e-81 PF00018.18.ls 1/1 1095 1149 .] 1 59 [] 82.4 1.3e-21 PF00018.18.fs 1/1 1095 1149 .] 1 59 [] 80.5 3e-21 PF07653.7.ls 1/1 1096 1149 .] 1 69 [] 54.5 3.2e-13 PF07653.7.fs 1/1 1096 1149 .] 1 69 [] 52.8 1.5e-14 Alignments of top-scoring domains: PF00063.11.ls: domain 1 of 1, from 70 to 728: score 1126.3, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp v+D+v+L++++E+++ +NL+kR++ d I TY+G vL+svNP+k+ p hk07299y1 70 VDDMVLLPQITEDAIAANLRKRFM-DDYIFTYIGSVLISVNPFKQMP 115 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA t++ i+ Y G ++E+pPHi+A+ d++YR+Ml d eNQ+++isGESGA hk07299y1 116 YFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGA 165 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT+++K++m Y+ vsg+++kv ++d ilqsNP+LEA hk07299y1 166 GKTVAAKYIMGYISKVSGGGEKVQ-----------HVKDIILQSNPLLEA 204 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT+RNNNSSRFGK++eIqF +G + GgkI++ LLEKSRVv hk07299y1 205 FGNAKTVRNNNSSRFGKYFEIQFSRGGEP----DGGKISNFLLEKSRVVM 250 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+e ERNFHI YQLL gas+++ +++L+L + p++Y YLnqs + hk07299y1 251 QNENERNFHIYYQLLEGASQEQ-RQNLGLMT---PDYYYYLNQSD----T 292 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk y v dg DD F +t++A+ +iG++ + q+ +++++A+ILhLGNi F hk07299y1 293 YQV-DGTDDRSDFGETLSAMQVIGIPPSIQQLVLQLVAGILHLGNIS-FC 340 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG +d+ ++A +e+ + l a LLG+D++ L+ +L+sr++ + hk07299y1 341 EDG------NYA---RVESVDL-LAFPAYLLGIDSGRLQEKLTSRKMDSR 380 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ g+R+e +++ +nveqA+y RDALAK++Y RLFd++Ve iN+a+++++ hk07299y1 381 -WGGRSESINVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQ- 428 asdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekN + + IGvLDIyGFEIF +kN hk07299y1 429 ------------------------------EEYSIGVLDIYGFEIF-QKN 447 SFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqaci +FEQ+cIN+vNEKLQQ+F+++++k+EQEEY++ gI Wt+I+y ++n+ ++ hk07299y1 448 GFEQFCINFVNEKLQQIFIELTLKAEQEEYVQAGIRWTPIQY-FNNKVVC 496 dLIEkK.kPpGIlslLDEeCrfPka....tDqtFldKLlqtfsskhprlt dLIE+K PpGI+s LD++C +++a++++ Dqt+l+KL ++ + h hk07299y1 497 DLIENKlSPPGIMSVLDDVCATMHAtgggADQTLLQKLQAAV-GTHE--- 542 hFAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddli hF + ++F i+HYAG+V Y+++gf+e N+D+Lf dli hk07299y1 543 HF-NSW-----------SAGFVIHHYAGKVSYDVSGFCERNRDVLFSDLI 580 sllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksakl +l++ S +l++LFpe hk07299y1 581 ELMQTSEQ-AFLRMLFPE-------------------------------- 597 gsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNe k kk+++ T+gs++k + + L++tL + +PH++RCIKPNe hk07299y1 598 ---KLDGDKKGRP-STAGSKIKKQANDLVATLMRC---TPHYIRCIKPNE 640 kKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLa K+++++++ +V+hQ+ +lG+ E +iR+rraGF++R f++FlqRY +L+ hk07299y1 641 TKRPRDWEENRVKHQVEYLGLKE-NIRVRRAGFAYRRQFAKFLQRYAILT 689 pktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR< p+tw p+w gd+++g++ +L + n+++++y++G TK+F + hk07299y1 690 PETW-----PRWRGDERQGVQHLLRAV-----NMEPDQYQMGSTKVFVK 728 -* hk07299y1 - - PF00063.11.fs: domain 1 of 1, from 70 to 728: score 1124.4, E = 0 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp v+D+v+L++++E+++ +NL+kR++ d I TY+G vL+svNP+k+ p hk07299y1 70 VDDMVLLPQITEDAIAANLRKRFM-DDYIFTYIGSVLISVNPFKQMP 115 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA t++ i+ Y G ++E+pPHi+A+ d++YR+Ml d eNQ+++isGESGA hk07299y1 116 YFTDREIDLYQGAAQYENPPHIYALTDNMYRNMLIDCENQCVIISGESGA 165 GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA GKT+++K++m Y+ vsg+++kv ++d ilqsNP+LEA hk07299y1 166 GKTVAAKYIMGYISKVSGGGEKVQ-----------HVKDIILQSNPLLEA 204 FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy FGNAKT+RNNNSSRFGK++eIqF +G + GgkI++ LLEKSRVv hk07299y1 205 FGNAKTVRNNNSSRFGKYFEIQFSRGGEP----DGGKISNFLLEKSRVVM 250 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc Q+e ERNFHI YQLL gas+++ +++L+L + p++Y YLnqs + hk07299y1 251 QNENERNFHIYYQLLEGASQEQ-RQNLGLMT---PDYYYYLNQSD----T 292 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk y v dg DD F +t++A+ +iG++ + q+ +++++A+ILhLGNi F hk07299y1 293 YQV-DGTDDRSDFGETLSAMQVIGIPPSIQQLVLQLVAGILHLGNIS-FC 340 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG +d+ ++A +e+ + l a LLG+D++ L+ +L+sr++ + hk07299y1 341 EDG------NYA---RVESVDL-LAFPAYLLGIDSGRLQEKLTSRKMDSR 380 gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ g+R+e +++ +nveqA+y RDALAK++Y RLFd++Ve iN+a+++++ hk07299y1 381 -WGGRSESINVTLNVEQAAYTRDALAKGLYARLFDFLVEAINRAMQKPQ- 428 asdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekN + + IGvLDIyGFEIF +kN hk07299y1 429 ------------------------------EEYSIGVLDIYGFEIF-QKN 447 SFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqaci +FEQ+cIN+vNEKLQQ+F+++++k+EQEEY++ gI Wt+I+y ++n+ ++ hk07299y1 448 GFEQFCINFVNEKLQQIFIELTLKAEQEEYVQAGIRWTPIQY-FNNKVVC 496 dLIEkK.kPpGIlslLDEeCrfPka....tDqtFldKLlqtfsskhprlt dLIE+K PpGI+s LD++C +++a++++ Dqt+l+KL ++ + h hk07299y1 497 DLIENKlSPPGIMSVLDDVCATMHAtgggADQTLLQKLQAAV-GTHE--- 542 hFAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddli hF + ++F i+HYAG+V Y+++gf+e N+D+Lf dli hk07299y1 543 HF-NSW-----------SAGFVIHHYAGKVSYDVSGFCERNRDVLFSDLI 580 sllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksakl +l++ S +l++LFpe hk07299y1 581 ELMQTSEQ-AFLRMLFPE-------------------------------- 597 gsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNe k kk+++ T+gs++k + + L++tL + +PH++RCIKPNe hk07299y1 598 ---KLDGDKKGRP-STAGSKIKKQANDLVATLMRC---TPHYIRCIKPNE 640 kKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLa K+++++++ +V+hQ+ +lG+ E +iR+rraGF++R f++FlqRY +L+ hk07299y1 641 TKRPRDWEENRVKHQVEYLGLKE-NIRVRRAGFAYRRQFAKFLQRYAILT 689 pktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR< p+tw p+w gd+++g++ +L + n+++++y++G TK+F + hk07299y1 690 PETW-----PRWRGDERQGVQHLLRAV-----NMEPDQYQMGSTKVFVK 728 -* hk07299y1 - - PF00612.17.ls: domain 1 of 1, from 745 to 765: score 16.7, E = 0.081 *->rraaikIQaawRGylaRkryk<-* a +IQ+awR+++a ++y+ hk07299y1 745 DGFARTIQKAWRRHVAVRKYE 765 PF06017.4.fs: domain 1 of 1, from 767 to 969: score 278.4, E = 1.3e-80 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase ++++As i+ +KKer+r+S++ R+FvGDYLglee p+l ++++++ hk07299y1 767 MREEASNILLNKKERRRNSIN--RNFVGDYLGLEE-RPELRQFLGKR 810 egqiikELRkdFgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkalyl e +V+Fad V+K++R ++Kp +R+L+LT+k++y+ hk07299y1 811 E------------RVDFADS----VTKYDR--RFKPIKRDLILTPKCVYV 842 vdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvkedla ++r+k+KkgpEK+q +vlK++++++++ +vSlS+ qDd+f++ hk07299y1 843 IGREKVKKGPEKGQVCEVLKKKVDIQALRGVSLSTRQDDFFILQ------ 886 kgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsdsi + +D++Le+ +k tE+v +L+k +++at++ +l++ fsd++ hk07299y1 887 EDAADSFLESVFK--------TEFVSLLCKRFEEATRR-PLPLT-FSDTL 926 eyrlkkekwgpGktktvkfqkdatggsellifKkkkghlvsiapq<-* ++r+kke+wg+G+t+ v+f++++++ + + ++ ++ +vs++++ hk07299y1 927 QFRVKKEGWGGGGTRSVTFSRGFGDLA--VLKVGGRTLTVSVGDG 969 PF06017.4.ls: domain 1 of 1, from 767 to 969: score 280.3, E = 3.6e-81 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase ++++As i+ +KKer+r+S++ R+FvGDYLglee p+l ++++++ hk07299y1 767 MREEASNILLNKKERRRNSIN--RNFVGDYLGLEE-RPELRQFLGKR 810 egqiikELRkdFgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkalyl e +V+Fad V+K++R ++Kp +R+L+LT+k++y+ hk07299y1 811 E------------RVDFADS----VTKYDR--RFKPIKRDLILTPKCVYV 842 vdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvkedla ++r+k+KkgpEK+q +vlK++++++++ +vSlS+ qDd+f++ hk07299y1 843 IGREKVKKGPEKGQVCEVLKKKVDIQALRGVSLSTRQDDFFILQ------ 886 kgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsdsi + +D++Le+ +k tE+v +L+k +++at++ +l++ fsd++ hk07299y1 887 EDAADSFLESVFK--------TEFVSLLCKRFEEATRR-PLPLT-FSDTL 926 eyrlkkekwgpGktktvkfqkdatggsellifKkkkghlvsiapq<-* ++r+kke+wg+G+t+ v+f++++++ + + ++ ++ +vs++++ hk07299y1 927 QFRVKKEGWGGGGTRSVTFSRGFGDLA--VLKVGGRTLTVSVGDG 969 PF00018.18.ls: domain 1 of 1, from 1095 to 1149: score 82.4, E = 1.3e-21 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++++ALY Y++++ dELsF ++vi++l ++++ gWWkgrl+ G+ hk07299y1 1095 PRCRALYQYVGQDVDELSFNVNEVIEILMEDPS-GWWKGRLH---GQ 1137 eGliPsNYVepv<-* eGl+P NYVe++ hk07299y1 1138 EGLFPGNYVEKI 1149 PF00018.18.fs: domain 1 of 1, from 1095 to 1149: score 80.5, E = 3e-21 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++++ALY Y++++ dELsF ++vi++l ++++ gWWkgrl+ G+ hk07299y1 1095 PRCRALYQYVGQDVDELSFNVNEVIEILMEDPS-GWWKGRLH---GQ 1137 eGliPsNYVepv<-* eGl+P NYVe++ hk07299y1 1138 EGLFPGNYVEKI 1149 PF07653.7.ls: domain 1 of 1, from 1096 to 1149: score 54.5, E = 3.2e-13 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++ra+ yv+ +d +e Ls+ +++v++++ ++d++gww hk07299y1 1096 RCRALYQYVG-QDVDE------LSFNVNEVIEIL-----MEDPsGWW 1130 egeslggGrrrRGlvPssaveel<-* +g++ +G++ Gl+P ++ve++ hk07299y1 1131 KGRL--HGQE--GLFPGNYVEKI 1149 PF07653.7.fs: domain 1 of 1, from 1096 to 1149: score 52.8, E = 1.5e-14 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++ra+ yv+ +d +e Ls+ +++v++++ ++d++gww hk07299y1 1096 RCRALYQYVG-QDVDE------LSFNVNEVIEIL-----MEDPsGWW 1130 egeslggGrrrRGlvPssaveel<-* +g++ +G++ Gl+P ++ve++ hk07299y1 1131 KGRL--HGQE--GLFPGNYVEKI 1149 //