hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-01363450/chunk_1/iprscan-20080813-01363450.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk07352 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04408.13.ls Helicase associated domain (HA2) 125.5 1.4e-34 1 PF04408.13.fs Helicase associated domain (HA2) 123.8 4.5e-34 1 PF07717.6.fs Domain of unknown function (DUF1605) 114.5 2.4e-32 1 PF07717.6.ls Domain of unknown function (DUF1605) 116.2 8.9e-32 1 PF00271.21.fs Helicase conserved C-terminal domain 50.7 3.5e-14 1 PF00575.13.ls S1 RNA binding domain 54.0 4.7e-13 1 PF00575.13.fs S1 RNA binding domain 52.1 7.5e-13 1 PF00271.21.ls Helicase conserved C-terminal domain 52.7 1.1e-12 1 PF08648.2.fs Protein of unknown function (DUF1777) 15.6 0.00018 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08648.2.fs 1/1 168 253 .. 1 129 [. 15.6 0.00018 PF00575.13.fs 1/1 276 351 .. 1 79 [] 52.1 7.5e-13 PF00575.13.ls 1/1 276 351 .. 1 79 [] 54.0 4.7e-13 PF00271.21.fs 1/1 816 910 .. 1 76 [] 50.7 3.5e-14 PF00271.21.ls 1/1 816 910 .. 1 76 [] 52.7 1.1e-12 PF04408.13.ls 1/1 971 1061 .. 1 124 [] 125.5 1.4e-34 PF04408.13.fs 1/1 971 1061 .. 1 124 [] 123.8 4.5e-34 PF07717.6.fs 1/1 1095 1195 .. 1 139 [] 114.5 2.4e-32 PF07717.6.ls 1/1 1095 1195 .. 1 139 [] 116.2 8.9e-32 Alignments of top-scoring domains: PF08648.2.fs: domain 1 of 1, from 168 to 253: score 15.6, E = 0.00018 *->MgrSRSPagerrRrrereRsprrkRRRgRsRdRdyreyrrnyGsGsG M +S ag+ + r + R +++k+ R+RsRdR hk07352 168 M---PSAAGQEKQRDAEHRDRTKKKKRSRSRDRN------------- 198 GaGRrdRrReRsRsRdRRDRslarrRsRsRtPsphARSrRsRSPrRvveh rdR+R+R+R Rd RD +rR RsR s++ R sR ++R hk07352 199 ----RDRDRDRERNRD-RDH---KRRHRSR--SRS-R---SRTRER---- 230 ernwqpekrsgReRSrsrspsRrrdPsPRrre<-* k R+RSrsrs s +d R+++ hk07352 231 ------NKVKSRYRSRSRSQSPPKD---RKDR 253 PF00575.13.fs: domain 1 of 1, from 276 to 351: score 52.1, E = 7.5e-13 *->kleeGdvveGtVtrvtklfGafVdlgengv....eGfvpiSeisrdk ++ +Gd++ G+Vt++ fG fV+l+ g +++ eG+v+iSe+ r+ hk07352 276 EPTIGDIYNGKVTSIMQ-FGCFVQLE--GLrkrwEGLVHISELRREG 319 eyrvedpsevlkvGdevkvkvlkvDkergriiLSik<-* rv + +v+++G++vkvkvl + ++ +LS+k hk07352 320 --RVANVADVVSKGQRVKVKVLSFTGTKT--SLSMK 351 PF00575.13.ls: domain 1 of 1, from 276 to 351: score 54.0, E = 4.7e-13 *->kleeGdvveGtVtrvtklfGafVdlgengv....eGfvpiSeisrdk ++ +Gd++ G+Vt++ fG fV+l+ g +++ eG+v+iSe+ r+ hk07352 276 EPTIGDIYNGKVTSIMQ-FGCFVQLE--GLrkrwEGLVHISELRREG 319 eyrvedpsevlkvGdevkvkvlkvDkergriiLSik<-* rv + +v+++G++vkvkvl + ++ +LS+k hk07352 320 --RVANVADVVSKGQRVKVKVLSFTGTKT--SLSMK 351 PF00271.21.fs: domain 1 of 1, from 816 to 910: score 50.7, E = 3.5e-14 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD + p++ ++++++ l++e +++i++ g++kv++aT++a+++++ hk07352 816 GPdVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLT 862 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- i ++ +V++ ++ +++ +++++ ++ +p + ++ QR+GRaGR G hk07352 863 IDGIYYVVDPGFvkqkvynsktgidqlvvtPISQAQAKQRAGRAGRTG 910 * hk07352 - - PF00271.21.ls: domain 1 of 1, from 816 to 910: score 52.7, E = 1.1e-12 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD + p++ ++++++ l++e +++i++ g++kv++aT++a+++++ hk07352 816 GPdVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLT 862 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- i ++ +V++ ++ +++ +++++ ++ +p + ++ QR+GRaGR G hk07352 863 IDGIYYVVDPGFvkqkvynsktgidqlvvtPISQAQAKQRAGRAGRTG 910 * hk07352 - - PF04408.13.ls: domain 1 of 1, from 971 to 1061: score 125.5, E = 1.4e-34 *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf +A e Ly LgAl D++g LT +lGr+ma++Pl+P L+kmL ++++ + hk07352 971 TAMEQLYTLGAL-DDEGLLT-RLGRRMAEFPLEPMLCKML-IMSVHL 1014 gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla gc++e+l+i+++Lsv +++f++ p+dk++ a+ hk07352 1015 GCSEEMLTIVSMLSV-QNVFYR----------PKDKQALAD--------- 1044 rakfegrsllksars.r.lts.lsDhlall<-* ++++++ ++++Dhl+ll hk07352 1045 -------------QKkAkFHQtEGDHLTLL 1061 PF04408.13.fs: domain 1 of 1, from 971 to 1061: score 123.8, E = 4.5e-34 *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf +A e Ly LgAl D++g LT +lGr+ma++Pl+P L+kmL ++++ + hk07352 971 TAMEQLYTLGAL-DDEGLLT-RLGRRMAEFPLEPMLCKML-IMSVHL 1014 gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla gc++e+l+i+++Lsv +++f++ p+dk++ a+ hk07352 1015 GCSEEMLTIVSMLSV-QNVFYR----------PKDKQALAD--------- 1044 rakfegrsllksars.r.lts.lsDhlall<-* ++++++ ++++Dhl+ll hk07352 1045 -------------QKkAkFHQtEGDHLTLL 1061 PF07717.6.fs: domain 1 of 1, from 1095 to 1195: score 114.5, E = 2.4e-32 *->sQLlrilkrlglilnessgdiellrkallaGlypnvArreedrggkg +Q l+i++r++l +++++ ++ka+++G++ n+A++++++g hk07352 1095 KQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEG--- 1138 sYktlr..svrlpvrskrsgvkdgeekgkfktndgnVfiHPsSvLfntkk Y+tl +++v V+iHPsS Lf + hk07352 1139 -YRTLIdqQV--------------------------VYIHPSSALF---N 1158 kppkwivytelvetskkgdgskvyardvtaispewllllapgki<-* ++p+w+vy+elv t+k +y+r+vt i+p wl+++ap hk07352 1159 RQPEWVVYHELVLTTK------EYMREVTTIDPRWLVEFAP-AF 1195 PF07717.6.ls: domain 1 of 1, from 1095 to 1195: score 116.2, E = 8.9e-32 *->sQLlrilkrlglilnessgdiellrkallaGlypnvArreedrggkg +Q l+i++r++l +++++ ++ka+++G++ n+A++++++g hk07352 1095 KQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEG--- 1138 sYktlr..svrlpvrskrsgvkdgeekgkfktndgnVfiHPsSvLfntkk Y+tl +++v V+iHPsS Lf + hk07352 1139 -YRTLIdqQV--------------------------VYIHPSSALF---N 1158 kppkwivytelvetskkgdgskvyardvtaispewllllapgki<-* ++p+w+vy+elv t+k +y+r+vt i+p wl+++ap hk07352 1159 RQPEWVVYHELVLTTK------EYMREVTTIDPRWLVEFAP-AF 1195 //