hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-01363450/chunk_1/iprscan-20080813-01363450.nocrc
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Query sequence: hk07352
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 125.0    8.3e-33   1
SM00490                                                  85.1    8.6e-21   1
SM00316                                                  75.6      6e-18   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00316      1/1     278   351 ..     1    72 []    75.6    6e-18
SM00487      1/1     578   762 ..     1   219 []   125.0  8.3e-33
SM00490      1/1     806   910 ..     1    86 []    85.1  8.6e-21

Alignments of top-scoring domains:
SM00316: domain 1 of 1, from 278 to 351: score 75.6, E = 6e-18
                   *->evGdvveGtVtsitpfGafVdlgn...gveGlihiselsddr.vkdp
                       +Gd++ G+Vtsi  fG+fV+l++ ++  eGl+hisel ++ +v ++
     hk07352   278    TIGDIYNGKVTSIMQFGCFVQLEGlrkRWEGLVHISELRREGrVANV 324  

                   eevlkvGdevkvkVlsvdkekgrisLslk<-*
                    +v+ +G++vkvkVls+     + sLs+k   
     hk07352   325 ADVVSKGQRVKVKVLSFTG--TKTSLSMK    351  

SM00487: domain 1 of 1, from 578 to 762: score 125.0, E = 8.3e-33
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                         + ++  ++ ++++++++ +i++++TGsGKT++++++l+e+++ +
     hk07352   578    ESlPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTS 624  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                            ++++ +++P+r++a+ +a+++++++          + ++g 
     hk07352   625 ---------RGKIGCTQPRRVAAMSVAKRVSEEF----------GCCLGQ 655  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                     G ++     ++++++s  t i ++T g+Ll++   ++  +l+++ +++
     hk07352   656 EVGyTI-----RFEDCTSPETVIKYMTDGMLLREClIDP--DLtQYAIIM 698  

                   lDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppeien
                   lDEaH++          ++d+l +llk++ +++++ ++++ SAT+ +  +
     hk07352   699 LDEAHERT--------IHTDVLFgLLKKTvqkRQDMKLIVTSATL-DAVK 739  

                   llklflnlpelfpnpvfisvgftlepieqf<-*
                   ++++f        +p+f ++g+   p+e+    
     hk07352   740 FSQYFYE------APIFTIPGR-TYPVEIL    762  

SM00490: domain 1 of 1, from 806 to 910: score 85.1, E = 8.6e-21
                   *->delaelLkellkd.pgikvarlHGglsqeeReeilekFrkgkikvLv
                      ++l+e++k+l +d p++ ++++++ l++e++++i++  + g +kv++
     hk07352   806    EILYERMKSLGPDvPELIILPVYSALPSEMQTRIFDPAPPGSRKVVI 852  

                   aTdvaerGlDipgvdlVInydl..................pwspasyiQR
                   aT++ae++l+i+g+ +V++ ++ +++  +++++ ++   +p+s a++ QR
     hk07352   853 ATNIAETSLTIDGIYYVVDPGFvkqkvynsktgidqlvvtPISQAQAKQR 902  

                   iGRaGRaG<-*
                   +GRaGR G   
     hk07352   903 AGRAGRTG    910  

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