hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-01422465/chunk_1/iprscan-20080813-01422465.nocrc
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Query sequence: hk07376
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    185.6    8.6e-62   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    187.5    3.1e-53   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      94   342 ..     1   272 []   185.6  8.6e-62
PF00001.12.ls   1/1      94   342 ..     1   272 []   187.5  3.1e-53

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 94 to 342: score 185.6, E = 8.6e-62
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+L+++v +  +   t ++++++NLAvADL +++  +  ++  +  
     hk07376    94    GNILILVVNISFREKMTIPDLYFINLAVADLILVADSLIEVFNLH-- 138  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    e+++   +lC + + +  vnmy+S+++Lt +S+DRY+A  +++r + +r
     hk07376   139 -ERYYDIAVLCTFMSLFLQVNMYSSVFFLTWMSFDRYIALARAMRCSLFR 187  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   t + +A++ ++l+W +++ ++l p++   + ++ ++     +++C+ d  
     hk07376   188 T-KHHARLSCGLIWMASVSATLVPFTA-VHLQHTDE-----ACFCFAD-- 228  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                              + +++l  ++gF++P+ +i  cY++I+r+l ++ r   +
     hk07376   229 ----------VREVQWLEVTLGFIVPFAIIGLCYSLIVRVLVRAHR---H 265  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc..lsiimsssCe
                   +  + +++ka++++l+vv+vF++CWlP ++++ ++ l ++++ + +   +
     hk07376   266 RGLRPRRQKALRMILAVVLVFFVCWLPENVFISVHLLQrtQPGAAPCKQS 315  

                   lervlptallvtlwLayvNsclNPiIY<-*
                   +++ +p   ++ ++ a++NsclNP+IY   
     hk07376   316 FRHAHPLTGHIVNLAAFSNSCLNPLIY    342  

PF00001.12.ls: domain 1 of 1, from 94 to 342: score 187.5, E = 3.1e-53
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+L+++v +  +   t ++++++NLAvADL +++  +  ++  +  
     hk07376    94    GNILILVVNISFREKMTIPDLYFINLAVADLILVADSLIEVFNLH-- 138  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    e+++   +lC + + +  vnmy+S+++Lt +S+DRY+A  +++r + +r
     hk07376   139 -ERYYDIAVLCTFMSLFLQVNMYSSVFFLTWMSFDRYIALARAMRCSLFR 187  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   t + +A++ ++l+W +++ ++l p++   + ++ ++     +++C+ d  
     hk07376   188 T-KHHARLSCGLIWMASVSATLVPFTA-VHLQHTDE-----ACFCFAD-- 228  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                              + +++l  ++gF++P+ +i  cY++I+r+l ++ r   +
     hk07376   229 ----------VREVQWLEVTLGFIVPFAIIGLCYSLIVRVLVRAHR---H 265  

                   kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc..lsiimsssCe
                   +  + +++ka++++l+vv+vF++CWlP ++++ ++ l ++++ + +   +
     hk07376   266 RGLRPRRQKALRMILAVVLVFFVCWLPENVFISVHLLQrtQPGAAPCKQS 315  

                   lervlptallvtlwLayvNsclNPiIY<-*
                   +++ +p   ++ ++ a++NsclNP+IY   
     hk07376   316 FRHAHPLTGHIVNLAAFSNSCLNPLIY    342  

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