hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-01474547/chunk_1/iprscan-20080813-01474547.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk07427 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.ls Cadherin domain 273.8 3.1e-79 5 PF00028.8.fs Cadherin domain 269.9 4.7e-78 6 PF08266.2.fs Cadherin-like 159.5 2.9e-46 1 PF08266.2.ls Cadherin-like 161.5 2e-45 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08266.2.fs 1/1 32 115 .. 1 84 [] 159.5 2.9e-46 PF08266.2.ls 1/1 32 115 .. 1 84 [] 161.5 2e-45 PF00028.8.fs 2/6 141 236 .. 1 107 [] 41.5 2.8e-11 PF00028.8.ls 1/5 141 236 .. 1 107 [] 43.3 7.6e-10 PF00028.8.ls 2/5 250 344 .. 1 107 [] 76.8 6.4e-20 PF00028.8.fs 3/6 250 344 .. 1 107 [] 74.9 7.1e-21 PF00028.8.fs 4/6 358 449 .. 1 107 [] 53.6 9.5e-15 PF00028.8.ls 3/5 358 449 .. 1 107 [] 55.4 1.7e-13 PF00028.8.fs 5/6 463 559 .. 1 107 [] 57.0 9.8e-16 PF00028.8.ls 4/5 463 559 .. 1 107 [] 58.9 1.6e-14 PF00028.8.ls 5/5 576 673 .. 1 107 [] 39.4 1.1e-08 PF00028.8.fs 6/6 591 673 .. 12 107 .] 39.6 9.6e-11 Alignments of top-scoring domains: PF08266.2.fs: domain 1 of 1, from 32 to 115: score 159.5, E = 2.9e-46 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gq++YSVpEE+e+G+fVG +A+DLGL+++eL R +++ S+g+ ++ hk07427 32 GQLHYSVPEEAEHGTFVGRIAQDLGLELAELVPRLFQLDSKGRGDLL 78 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ++nl++G L+vn RiDREeLCg+s+ C++hlev+++ hk07427 79 EVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDR 115 PF08266.2.ls: domain 1 of 1, from 32 to 115: score 161.5, E = 2e-45 *->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF gq++YSVpEE+e+G+fVG +A+DLGL+++eL R +++ S+g+ ++ hk07427 32 GQLHYSVPEEAEHGTFVGRIAQDLGLELAELVPRLFQLDSKGRGDLL 78 qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-* ++nl++G L+vn RiDREeLCg+s+ C++hlev+++ hk07427 79 EVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDR 115 PF00028.8.fs: domain 2 of 6, from 141 to 236: score 41.5, E = 2.8e-11 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + + E p ++ +A+DaD g N+ ++Y++++++ F hk07427 141 KNLFIAESRPLDSRFPLEGASDAD--IGENALLTYRLSPNE---YFF 182 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg +d + +n ++++ ++ ++k LDREe+ +e +L + AtD+ g hk07427 183 LDV-PTSNQQVkplgLVLRKLLDREET--PELHLLLTATDG-------GK 222 pplsstatvtitVl<-* p l++t+++ itVl hk07427 223 PELTGTVQLLITVL 236 PF00028.8.ls: domain 1 of 5, from 141 to 236: score 43.3, E = 7.6e-10 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr + + E p ++ +A+DaD g N+ ++Y++++++ F hk07427 141 KNLFIAESRPLDSRFPLEGASDAD--IGENALLTYRLSPNE---YFF 182 IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg +d + +n ++++ ++ ++k LDREe+ +e +L + AtD+ g hk07427 183 LDV-PTSNQQVkplgLVLRKLLDREET--PELHLLLTATDG-------GK 222 pplsstatvtitVl<-* p l++t+++ itVl hk07427 223 PELTGTVQLLITVL 236 PF00028.8.ls: domain 2 of 5, from 250 to 344: score 76.8, E = 6.4e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y++ +pEn+++Gt v++ +A+D D +g+Ng i Ys++++ +++ + hk07427 250 YTVKLPENVSIGTLVIHPNASDLD--EGLNGDIIYSFSSDVSpdiKS 294 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F++dp +G i++ + D Ee + + + veA+D g p hk07427 295 KFHMDPLSGA----ITVIGHMDFEES--RAHKIPVEAVDK-------GFP 331 plsstatvtitVl<-* pl + +t+ ++V hk07427 332 PLAGHCTLLVEVV 344 PF00028.8.fs: domain 3 of 6, from 250 to 344: score 74.9, E = 7.1e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg y++ +pEn+++Gt v++ +A+D D +g+Ng i Ys++++ +++ + hk07427 250 YTVKLPENVSIGTLVIHPNASDLD--EGLNGDIIYSFSSDVSpdiKS 294 wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp +F++dp +G i++ + D Ee + + + veA+D g p hk07427 295 KFHMDPLSGA----ITVIGHMDFEES--RAHKIPVEAVDK-------GFP 331 plsstatvtitVl<-* pl + +t+ ++V hk07427 332 PLAGHCTLLVEVV 344 PF00028.8.fs: domain 4 of 6, from 358 to 449: score 53.6, E = 9.5e-15 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s+ v+E+a+ Gt ++ + ++D D +Ng+++ s++++ p + + hk07427 358 LSVPVKEDAQLGTVIALISVIDLD--ADANGQVTCSLTPHVPFKLVS 402 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++ + + + + LDRE+ + YeL+v A+D+ g+p+l hk07427 403 TYKNYYS----LVLDRALDRESV--SAYELVVTARDG-------GSPSLW 439 statvtitVl<-* +ta+v ++V hk07427 440 ATARVSVEVA 449 PF00028.8.ls: domain 3 of 5, from 358 to 449: score 55.4, E = 1.7e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s+ v+E+a+ Gt ++ + ++D D +Ng+++ s++++ p + + hk07427 358 LSVPVKEDAQLGTVIALISVIDLD--ADANGQVTCSLTPHVPFKLVS 402 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls ++ + + + + LDRE+ + YeL+v A+D+ g+p+l hk07427 403 TYKNYYS----LVLDRALDRESV--SAYELVVTARDG-------GSPSLW 439 statvtitVl<-* +ta+v ++V hk07427 440 ATARVSVEVA 449 PF00028.8.fs: domain 5 of 6, from 463 to 559: score 57.0, E = 9.8e-16 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ v+En p+G ++ tv A+DaD N+ ++Ys+++ ++++ hk07427 463 YTVFVKENNPPGCHIFTVSARDAD--AQENALVSYSLVERRLgersl 507 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +++ ++G ++ +pLD Ee + + v+A+Da g hk07427 508 SSYVSVHAESGK----VYALQPLDHEEL--ELLQFQVSARDA-------G 544 gpplsstatvtitVl<-* ppl s +t+ + Vl hk07427 545 VPPLGSNVTLQVFVL 559 PF00028.8.ls: domain 4 of 5, from 463 to 559: score 58.9, E = 1.6e-14 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp..... y++ v+En p+G ++ tv A+DaD N+ ++Ys+++ ++++ hk07427 463 YTVFVKENNPPGCHIFTVSARDAD--AQENALVSYSLVERRLgersl 507 ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg + +++ ++G ++ +pLD Ee + + v+A+Da g hk07427 508 SSYVSVHAESGK----VYALQPLDHEEL--ELLQFQVSARDA-------G 544 gpplsstatvtitVl<-* ppl s +t+ + Vl hk07427 545 VPPLGSNVTLQVFVL 559 PF00028.8.ls: domain 5 of 5, from 576 to 673: score 39.4, E = 1.1e-08 *->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsilggnp. + v+E + ++ + G v+ v+A+DaD +g N+ ++Y + + + hk07427 576 TDGAVSEMVLrsvgAGVVVGKVRAVDAD--SGYNAWLSYELQPETAs 620 .ggwFrIdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllas + Fr+ +tG+ istt+ LD +++++ +L v+++D+ hk07427 621 aSIPFRVGLYTGE----ISTTRALDE---TdAPRQRLLVLVKDH------ 657 gggpplsstatvtitVl<-* g+p+l++tatv +++ hk07427 658 -GEPALTATATVLVSLV 673 PF00028.8.fs: domain 6 of 6, from 591 to 673: score 39.6, E = 9.6e-11 *->GtevltvtAtDaDdPlgpNgrirYsilggnp..ggwFrIdpdtGdne G v+ v+A+DaD +g N+ ++Y + + + + Fr+ +tG+ hk07427 591 GVVVGKVRAVDAD--SGYNAWLSYELQPETAsaSIPFRVGLYTGE-- 633 giisttkpLDREeif.ngeYeLtveAtDadpllasgggpplsstatvtit istt+ LD +++++ +L v+++D+ g+p+l++tatv ++ hk07427 634 --ISTTRALDE---TdAPRQRLLVLVKDH-------GEPALTATATVLVS 671 Vl<-* + hk07427 672 LV 673 //