hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-01474547/chunk_1/iprscan-20080813-01474547.nocrc
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Query sequence: hk07427
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00028.8.ls Cadherin domain 273.8 3.1e-79 5
PF00028.8.fs Cadherin domain 269.9 4.7e-78 6
PF08266.2.fs Cadherin-like 159.5 2.9e-46 1
PF08266.2.ls Cadherin-like 161.5 2e-45 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF08266.2.fs 1/1 32 115 .. 1 84 [] 159.5 2.9e-46
PF08266.2.ls 1/1 32 115 .. 1 84 [] 161.5 2e-45
PF00028.8.fs 2/6 141 236 .. 1 107 [] 41.5 2.8e-11
PF00028.8.ls 1/5 141 236 .. 1 107 [] 43.3 7.6e-10
PF00028.8.ls 2/5 250 344 .. 1 107 [] 76.8 6.4e-20
PF00028.8.fs 3/6 250 344 .. 1 107 [] 74.9 7.1e-21
PF00028.8.fs 4/6 358 449 .. 1 107 [] 53.6 9.5e-15
PF00028.8.ls 3/5 358 449 .. 1 107 [] 55.4 1.7e-13
PF00028.8.fs 5/6 463 559 .. 1 107 [] 57.0 9.8e-16
PF00028.8.ls 4/5 463 559 .. 1 107 [] 58.9 1.6e-14
PF00028.8.ls 5/5 576 673 .. 1 107 [] 39.4 1.1e-08
PF00028.8.fs 6/6 591 673 .. 12 107 .] 39.6 9.6e-11
Alignments of top-scoring domains:
PF08266.2.fs: domain 1 of 1, from 32 to 115: score 159.5, E = 2.9e-46
*->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF
gq++YSVpEE+e+G+fVG +A+DLGL+++eL R +++ S+g+ ++
hk07427 32 GQLHYSVPEEAEHGTFVGRIAQDLGLELAELVPRLFQLDSKGRGDLL 78
qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-*
++nl++G L+vn RiDREeLCg+s+ C++hlev+++
hk07427 79 EVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDR 115
PF08266.2.ls: domain 1 of 1, from 32 to 115: score 161.5, E = 2e-45
*->gqirYSVpEEterGsfVGNlAKDLGLdvqeLaaRgaRivSggnkqyF
gq++YSVpEE+e+G+fVG +A+DLGL+++eL R +++ S+g+ ++
hk07427 32 GQLHYSVPEEAEHGTFVGRIAQDLGLELAELVPRLFQLDSKGRGDLL 78
qlnletGdLlvnERiDREeLCgqsepCvLhlevllEn<-*
++nl++G L+vn RiDREeLCg+s+ C++hlev+++
hk07427 79 EVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDR 115
PF00028.8.fs: domain 2 of 6, from 141 to 236: score 41.5, E = 2.8e-11
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
+ + E p ++ +A+DaD g N+ ++Y++++++ F
hk07427 141 KNLFIAESRPLDSRFPLEGASDAD--IGENALLTYRLSPNE---YFF 182
IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg
+d + +n ++++ ++ ++k LDREe+ +e +L + AtD+ g
hk07427 183 LDV-PTSNQQVkplgLVLRKLLDREET--PELHLLLTATDG-------GK 222
pplsstatvtitVl<-*
p l++t+++ itVl
hk07427 223 PELTGTVQLLITVL 236
PF00028.8.ls: domain 1 of 5, from 141 to 236: score 43.3, E = 7.6e-10
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
+ + E p ++ +A+DaD g N+ ++Y++++++ F
hk07427 141 KNLFIAESRPLDSRFPLEGASDAD--IGENALLTYRLSPNE---YFF 182
IdpdtGdnegi....isttkpLDREeifngeYeLtveAtDadpllasggg
+d + +n ++++ ++ ++k LDREe+ +e +L + AtD+ g
hk07427 183 LDV-PTSNQQVkplgLVLRKLLDREET--PELHLLLTATDG-------GK 222
pplsstatvtitVl<-*
p l++t+++ itVl
hk07427 223 PELTGTVQLLITVL 236
PF00028.8.ls: domain 2 of 5, from 250 to 344: score 76.8, E = 6.4e-20
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg
y++ +pEn+++Gt v++ +A+D D +g+Ng i Ys++++ +++ +
hk07427 250 YTVKLPENVSIGTLVIHPNASDLD--EGLNGDIIYSFSSDVSpdiKS 294
wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp
+F++dp +G i++ + D Ee + + + veA+D g p
hk07427 295 KFHMDPLSGA----ITVIGHMDFEES--RAHKIPVEAVDK-------GFP 331
plsstatvtitVl<-*
pl + +t+ ++V
hk07427 332 PLAGHCTLLVEVV 344
PF00028.8.fs: domain 3 of 6, from 250 to 344: score 74.9, E = 7.1e-21
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp...gg
y++ +pEn+++Gt v++ +A+D D +g+Ng i Ys++++ +++ +
hk07427 250 YTVKLPENVSIGTLVIHPNASDLD--EGLNGDIIYSFSSDVSpdiKS 294
wFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggp
+F++dp +G i++ + D Ee + + + veA+D g p
hk07427 295 KFHMDPLSGA----ITVIGHMDFEES--RAHKIPVEAVDK-------GFP 331
plsstatvtitVl<-*
pl + +t+ ++V
hk07427 332 PLAGHCTLLVEVV 344
PF00028.8.fs: domain 4 of 6, from 358 to 449: score 53.6, E = 9.5e-15
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
s+ v+E+a+ Gt ++ + ++D D +Ng+++ s++++ p + +
hk07427 358 LSVPVKEDAQLGTVIALISVIDLD--ADANGQVTCSLTPHVPFKLVS 402
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
++ + + + + LDRE+ + YeL+v A+D+ g+p+l
hk07427 403 TYKNYYS----LVLDRALDRESV--SAYELVVTARDG-------GSPSLW 439
statvtitVl<-*
+ta+v ++V
hk07427 440 ATARVSVEVA 449
PF00028.8.ls: domain 3 of 5, from 358 to 449: score 55.4, E = 1.7e-13
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
s+ v+E+a+ Gt ++ + ++D D +Ng+++ s++++ p + +
hk07427 358 LSVPVKEDAQLGTVIALISVIDLD--ADANGQVTCSLTPHVPFKLVS 402
IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls
++ + + + + LDRE+ + YeL+v A+D+ g+p+l
hk07427 403 TYKNYYS----LVLDRALDRESV--SAYELVVTARDG-------GSPSLW 439
statvtitVl<-*
+ta+v ++V
hk07427 440 ATARVSVEVA 449
PF00028.8.fs: domain 5 of 6, from 463 to 559: score 57.0, E = 9.8e-16
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.....
y++ v+En p+G ++ tv A+DaD N+ ++Ys+++ ++++
hk07427 463 YTVFVKENNPPGCHIFTVSARDAD--AQENALVSYSLVERRLgersl 507
ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg
+ +++ ++G ++ +pLD Ee + + v+A+Da g
hk07427 508 SSYVSVHAESGK----VYALQPLDHEEL--ELLQFQVSARDA-------G 544
gpplsstatvtitVl<-*
ppl s +t+ + Vl
hk07427 545 VPPLGSNVTLQVFVL 559
PF00028.8.ls: domain 4 of 5, from 463 to 559: score 58.9, E = 1.6e-14
*->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.....
y++ v+En p+G ++ tv A+DaD N+ ++Ys+++ ++++
hk07427 463 YTVFVKENNPPGCHIFTVSARDAD--AQENALVSYSLVERRLgersl 507
ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgg
+ +++ ++G ++ +pLD Ee + + v+A+Da g
hk07427 508 SSYVSVHAESGK----VYALQPLDHEEL--ELLQFQVSARDA-------G 544
gpplsstatvtitVl<-*
ppl s +t+ + Vl
hk07427 545 VPPLGSNVTLQVFVL 559
PF00028.8.ls: domain 5 of 5, from 576 to 673: score 39.4, E = 1.1e-08
*->ysasvpEnap....vGtevltvtAtDaDdPlgpNgrirYsilggnp.
+ v+E + ++ + G v+ v+A+DaD +g N+ ++Y + + +
hk07427 576 TDGAVSEMVLrsvgAGVVVGKVRAVDAD--SGYNAWLSYELQPETAs 620
.ggwFrIdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllas
+ Fr+ +tG+ istt+ LD +++++ +L v+++D+
hk07427 621 aSIPFRVGLYTGE----ISTTRALDE---TdAPRQRLLVLVKDH------ 657
gggpplsstatvtitVl<-*
g+p+l++tatv +++
hk07427 658 -GEPALTATATVLVSLV 673
PF00028.8.fs: domain 6 of 6, from 591 to 673: score 39.6, E = 9.6e-11
*->GtevltvtAtDaDdPlgpNgrirYsilggnp..ggwFrIdpdtGdne
G v+ v+A+DaD +g N+ ++Y + + + + Fr+ +tG+
hk07427 591 GVVVGKVRAVDAD--SGYNAWLSYELQPETAsaSIPFRVGLYTGE-- 633
giisttkpLDREeif.ngeYeLtveAtDadpllasgggpplsstatvtit
istt+ LD +++++ +L v+++D+ g+p+l++tatv ++
hk07427 634 --ISTTRALDE---TdAPRQRLLVLVKDH-------GEPALTATATVLVS 671
Vl<-*
+
hk07427 672 LV 673
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