hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-01474547/chunk_1/iprscan-20080813-01474547.nocrc
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Query sequence: hk07427
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 460.3   9.4e-134   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      48   134 ..     1   121 []    18.6    0.036
SM00112    2/6     158   243 ..     1   121 []    82.1  6.8e-20
SM00112    3/6     267   351 ..     1   121 []    98.2  9.7e-25
SM00112    4/6     375   456 ..     1   121 []    99.1  5.1e-25
SM00112    5/6     480   566 ..     1   121 []   101.6  9.4e-26
SM00112    6/6     597   679 ..     1   121 []    60.8  1.8e-13

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 48 to 134: score 18.6, E = 0.036
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v  +  D g   e ++      ++ ++ + +++++++l +++ ++G 
     hk07427    48    VGRIAQDLG--LELAE------LVPRLFQldskgrgdLLEVNLQNG- 85   

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                             i++++ ++DREe +++      +e ++  e+         
     hk07427    86 ----------ILFVNSRIDREELCGRS-----AECSIHLEVIVDR----- 115  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                      v v+V+D+NDN+P   
     hk07427   116 -------------PLQVFHVDVEVKDINDNPP    134  

SM00112: domain 2 of 6, from 158 to 243: score 82.1, E = 6.8e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                        A+DaD g   eN+       +tY+++++++F +d  t ++ +   
     hk07427   158    EGASDADIG---ENAL------LTYRLSPneYFFLDVPTSNQQVK-- 193  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                      + ++++k LDREe+         +e +L  +AtDgG p         
     hk07427   194 --PLGLVLRKLLDREET---------PELHLLLTATDGGKPE-------- 224  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l++t+++ +tVlD NDNaP   
     hk07427   225 -------LTGTVQLLITVLDNNDNAP    243  

SM00112: domain 3 of 6, from 267 to 351: score 98.2, E = 9.7e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                       +A+D+D+g    Ng+      + Ys++s+ +++ +++F++dp +G 
     hk07427   267    PNASDLDEG---LNGD------IIYSFSSdvspdiksKFHMDPLSG- 303  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              it+ ++ D+Ee            + + veA+D+G pp  
     hk07427   304 ----------AITVIGHMDFEES---------RAHKIPVEAVDKGFPP-- 332  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                l +++t+ v+V+DvNDNaP   
     hk07427   333 -------------LAGHCTLLVEVVDVNDNAP    351  

SM00112: domain 4 of 6, from 375 to 456: score 99.1, E = 5.1e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +s++D+D++    Ng+      vt+s++++ +F++ ++  +      
     hk07427   375    ISVIDLDAD---ANGQ------VTCSLTPhvPFKLVSTYKN------ 406  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++ +++ ++LDRE+          s Y+L+v+A+DgG+p+        
     hk07427   407 --YYSLVLDRALDRESV---------SAYELVVTARDGGSPS-------- 437  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          l +ta v v+V DvNDNaP   
     hk07427   438 -------LWATARVSVEVADVNDNAP    456  

SM00112: domain 5 of 6, from 480 to 566: score 101.6, E = 9.4e-26
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      vsA+DaD+    eN+       v+Ys+++++ ++++ +++ s+++e+
     hk07427   480    VSARDADAQ---ENAL------VSYSLVErrlgerslssYVSVHAES 517  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            +++++pLD+Ee          +  +++v A+D+G pp
     hk07427   518 G-----------KVYALQPLDHEEL---------ELLQFQVSARDAGVPP 547  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  l s++t++v+VlD+NDNaP   
     hk07427   548 ---------------LGSNVTLQVFVLDENDNAP    566  

SM00112: domain 6 of 6, from 597 to 679: score 60.8, E = 1.8e-13
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v+A+DaDsg    N++      ++Y++ +++ + + +F++   tG  
     hk07427   597    VRAVDADSG---YNAW------LSYELQPetasasiPFRVGLYTG-- 632  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +i+tt++LD  +          ++ +L v ++D+G+p    
     hk07427   633 ---------EISTTRALDETDA---------PRQRLLVLVKDHGEPA--- 661  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               l++tatv v ++     aP   
     hk07427   662 ------------LTATATVLVSLVE-SGQAP    679  

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