hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-01533946/chunk_1/iprscan-20080813-01533946.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk07496 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05682.3.fs Phosphorylase kinase alpha/beta 2466.4 0 3 PF05682.3.ls Phosphorylase kinase alpha/beta 2449.3 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05682.3.fs 1/3 22 708 .. 1 712 [. 1708.9 0 PF05682.3.ls 1/1 22 1090 .. 1 1398 [] 2449.3 0 PF05682.3.fs 2/3 716 917 .. 859 1089 .. 386.4 3.9e-113 PF05682.3.fs 3/3 918 1090 .. 1188 1398 .] 371.0 1.7e-108 Alignments of top-scoring domains: PF05682.3.fs: domain 1 of 3, from 22 to 708: score 1708.9, E = 0 *->mrsRsnSleEilkdifLkrsdyEdlgvRLDyYyriVkrtILlyQnPv Rs+S++E+lk+i+L+r+d+E+l+++LD YyriVk+t+LlyQ+P+ hk07496 22 ---RSGSVYEPLKSINLPRPDNETLWDKLDHYYRIVKSTLLLYQSPT 65 TGLlPAstaitahgdqkdAwVRDNVYsIlAVWGLalAYRKiADrDEDkaK TGL+P++t +g+++ A++ D++Y+++++W+LalAYR+i D+Dk++ hk07496 66 TGLFPTKT----CGGDQKAKIQDSLYCAAGAWALALAYRRI---DDDKGR 108 aYELEQSvVKLMRGLLhCMmRQadKVEkFKqtQSptdsLHAKYntkTGdt ++ELE+S++K+MRG+L+C+mRQadKV++FKq+++pt++LH+ +n++TGd+ hk07496 109 THELEHSAIKCMRGILYCYMRQADKVQQFKQDPRPTTCLHSVFNVHTGDE 158 VvgDdeWGHLQiDAvSlYLLfLAQMtASGLqIIytlDEVaFiQNLVFYIE +++++e+GHLQi+AvSlYLL+L++M++SGLqIIy++DEV+FiQNLVF++E hk07496 159 LLSYEEYGHLQINAVSLYLLYLVEMISSGLQIIYNTDEVSFIQNLVFCVE 208 rAYrvPDyGiWERGdKtNqGipELNASSVGMAKAALEAiNELDLFGarGg r+YrvPD+G+WERG+K+N+G++EL++SSVG+AKAALEAiN+++LFG++G+ hk07496 209 RVYRVPDFGVWERGSKYNNGSTELHSSSVGLAKAALEAINGFNLFGNQGC 258 paSVIHVLpDEvnrcrSiLeSlLPREStSKEiDAgLLsvISFPAFAveDa ++SVI+V++D++nr+r++L+SlLPRES+S+++DA+LL++IS+PAFA++D hk07496 259 SWSVIFVDLDAHNRNRQTLCSLLPRESRSHNTDAALLPCISYPAFALDDE 308 qLveqTKdeIInKLqGKYGCKRFLRDGYrTpkEDpsRLYYepaELKlFEn +L qT+d++++KL+GKYG+KRFLRDGYrT++EDp+R YY+paE+KlF++ hk07496 309 VLFSQTLDKVVRKLKGKYGFKRFLRDGYRTSLEDPNRCYYKPAEIKLFDG 358 IECEWPlFftYlilDGvFkgdakQVqEYqeaLekvLirgkGvsaniGnGi IECE+P+Ff+Y+++DGvF+g++kQVqEYq++L++vL+ ++ +G+ hk07496 359 IECEFPIFFLYMMIDGVFRGNPKQVQEYQDLLTPVLHHTT-------EGY 401 pLvPelYaVPaDkVeeEyrnPgSqdRvPsgklRDGkPfLWGQSLYILgqL p+vP++Y+VPaD+Ve+E+ nPgSq+R+Ps+++RDGk+fLWGQ+LYI+++L hk07496 402 PVVPKYYYVPADFVEYEKNNPGSQKRFPSNCGRDGKLFLWGQALYIIAKL 451 LaEGlLAvgEiDPLnRrlstqkKPrvagRYSafqgletDvVVQVvllAEs La++l+++++iDP++R++++ +++v++R+S++++le+D+VV+V+l+AEs hk07496 452 LADELISPKDIDPVQRYVPLKDQRNVSMRFSNQGPLENDLVVHVALIAES 501 eelqalLathGiqvQTpaeVePIqVqpareLskiYthLGrNnKLgLSGRP ++lq++L+t+Giq+QTp++VePIq++p++eL+k+Y +LG+N+KLgLSGRP hk07496 502 QRLQVFLNTYGIQTQTPQQVEPIQIWPQQELVKAYLQLGINEKLGLSGRP 551 yRhiGvLGTSKlYrIrgktvvFtPqFlDlsdFYLalDnellvDdlrtELa +R+iG+LGTSK+YrI+gktvv++P+++DlsdFY+++D+ ll+Dd++++L+ hk07496 552 DRPIGCLGTSKIYRILGKTVVCYPIIFDLSDFYMSQDVFLLIDDIKNALQ 601 ylksyWrmlGRPtltllitetmLredgfavdsamLdlLrkLkdGyigGvr ++k+yW+m+GRP++++li+e+++r+++f+ ++Ld+L++Lk+G igGv+ hk07496 602 FIKQYWKMHGRPLFLVLIREDNIRGSRFN---PILDMLAALKKGIIGGVK 648 VqlGrLsellsTSaitrLdFLdqsedekLaeddsedrlspdkheylkeql V+++rL++l+s++++++LdFL++s++e+L+e++s+++l+p+kh+++k+q hk07496 649 VHVDRLQTLISGAVVEQLDFLRISDTEELPEFKSFEELEPPKHSKVKRQ- 697 ldsYnnrstan.rgGq<-* + +++ + Gq hk07496 698 -----SSTPSApELGQ 708 PF05682.3.ls: domain 1 of 1, from 22 to 1090: score 2449.3, E = 0 *->mrsRsnSleEilkdifLkrsdyEdlgvRLDyYyriVkrtILlyQnPv Rs+S++E+lk+i+L+r+d+E+l+++LD YyriVk+t+LlyQ+P+ hk07496 22 ---RSGSVYEPLKSINLPRPDNETLWDKLDHYYRIVKSTLLLYQSPT 65 TGLlPAstaitahgdqkdAwVRDNVYsIlAVWGLalAYRKiADrDEDkaK TGL+P++t +g+++ A++ D++Y+++++W+LalAYR+i D+Dk++ hk07496 66 TGLFPTKT----CGGDQKAKIQDSLYCAAGAWALALAYRRI---DDDKGR 108 aYELEQSvVKLMRGLLhCMmRQadKVEkFKqtQSptdsLHAKYntkTGdt ++ELE+S++K+MRG+L+C+mRQadKV++FKq+++pt++LH+ +n++TGd+ hk07496 109 THELEHSAIKCMRGILYCYMRQADKVQQFKQDPRPTTCLHSVFNVHTGDE 158 VvgDdeWGHLQiDAvSlYLLfLAQMtASGLqIIytlDEVaFiQNLVFYIE +++++e+GHLQi+AvSlYLL+L++M++SGLqIIy++DEV+FiQNLVF++E hk07496 159 LLSYEEYGHLQINAVSLYLLYLVEMISSGLQIIYNTDEVSFIQNLVFCVE 208 rAYrvPDyGiWERGdKtNqGipELNASSVGMAKAALEAiNELDLFGarGg r+YrvPD+G+WERG+K+N+G++EL++SSVG+AKAALEAiN+++LFG++G+ hk07496 209 RVYRVPDFGVWERGSKYNNGSTELHSSSVGLAKAALEAINGFNLFGNQGC 258 paSVIHVLpDEvnrcrSiLeSlLPREStSKEiDAgLLsvISFPAFAveDa ++SVI+V++D++nr+r++L+SlLPRES+S+++DA+LL++IS+PAFA++D hk07496 259 SWSVIFVDLDAHNRNRQTLCSLLPRESRSHNTDAALLPCISYPAFALDDE 308 qLveqTKdeIInKLqGKYGCKRFLRDGYrTpkEDpsRLYYepaELKlFEn +L qT+d++++KL+GKYG+KRFLRDGYrT++EDp+R YY+paE+KlF++ hk07496 309 VLFSQTLDKVVRKLKGKYGFKRFLRDGYRTSLEDPNRCYYKPAEIKLFDG 358 IECEWPlFftYlilDGvFkgdakQVqEYqeaLekvLirgkGvsaniGnGi IECE+P+Ff+Y+++DGvF+g++kQVqEYq++L++vL+ ++ +G+ hk07496 359 IECEFPIFFLYMMIDGVFRGNPKQVQEYQDLLTPVLHHTT-------EGY 401 pLvPelYaVPaDkVeeEyrnPgSqdRvPsgklRDGkPfLWGQSLYILgqL p+vP++Y+VPaD+Ve+E+ nPgSq+R+Ps+++RDGk+fLWGQ+LYI+++L hk07496 402 PVVPKYYYVPADFVEYEKNNPGSQKRFPSNCGRDGKLFLWGQALYIIAKL 451 LaEGlLAvgEiDPLnRrlstqkKPrvagRYSafqgletDvVVQVvllAEs La++l+++++iDP++R++++ +++v++R+S++++le+D+VV+V+l+AEs hk07496 452 LADELISPKDIDPVQRYVPLKDQRNVSMRFSNQGPLENDLVVHVALIAES 501 eelqalLathGiqvQTpaeVePIqVqpareLskiYthLGrNnKLgLSGRP ++lq++L+t+Giq+QTp++VePIq++p++eL+k+Y +LG+N+KLgLSGRP hk07496 502 QRLQVFLNTYGIQTQTPQQVEPIQIWPQQELVKAYLQLGINEKLGLSGRP 551 yRhiGvLGTSKlYrIrgktvvFtPqFlDlsdFYLalDnellvDdlrtELa +R+iG+LGTSK+YrI+gktvv++P+++DlsdFY+++D+ ll+Dd++++L+ hk07496 552 DRPIGCLGTSKIYRILGKTVVCYPIIFDLSDFYMSQDVFLLIDDIKNALQ 601 ylksyWrmlGRPtltllitetmLredgfavdsamLdlLrkLkdGyigGvr ++k+yW+m+GRP++++li+e+++r+++f+ ++Ld+L++Lk+G igGv+ hk07496 602 FIKQYWKMHGRPLFLVLIREDNIRGSRFN---PILDMLAALKKGIIGGVK 648 VqlGrLsellsTSaitrLdFLdqsedekLaeddsedrlspdkheylkeql V+++rL++l+s++++++LdFL++s++e+L+e++s+++l+p+kh+++k+q hk07496 649 VHVDRLQTLISGAVVEQLDFLRISDTEELPEFKSFEELEPPKHSKVKRQ- 697 ldsYnnrstanrgGqLrprtlrsrdeldkylkklLasTaskchlpplvdk hk07496 - -------------------------------------------------- - dghrvfsashtTrdiLSltakakeLqvqkqshmylptktlkahRkSLNLl S+t a+eL +q+ hk07496 698 ----------------SSTPSAPELGQQP--------------------- 710 DsphPeegptlkrlkvgndlireniyPvDPhhsrsaiDrrsefvrqqemP hk07496 - -------------------------------------------------- - kiliqlhlsvdefgetdteeLvsqLretenLqeQadlLyiLlkrkGpdFd + e+ +++t+e++++L+++++L++Qa+lL+iLlkr+Gp+F hk07496 711 ------DVNISEWKDKPTHEILQKLNDCSCLASQAILLGILLKREGPNF- 753 TaLgfknkseenatPnannaGmLeeqqgvTVrdlLeeLYekAGslklWgl +++++TV+d++e++Y++AGs+klW + hk07496 754 ------------------------ITKEGTVSDHIERVYRRAGSQKLWSV 779 VRYisGllrkrvesLaeavTdlLvhgKqlTVGlppePrEkvIsaPLPpee VR++++ll k+v+sLa+ +T +Lv gKq+T+G++++ +E+vIs+PL+p++ hk07496 780 VRRAASLLSKVVDSLAPSITNVLVQGKQVTLGAFGH-EEEVISNPLSPRV 828 lknlIyeacgeyDiseAVLTQEvvvYLamlIrtqPeLFsgmLrLRIGlII ++n+Iy++c+++D++eAV++ E+v++++++I+++PeLFsgmL++RIG+II hk07496 829 IQNIIYYKCNTHDEREAVIQKELVIHIGWIISNNPELFSGMLKIRIGWII 878 qvMatELarsLncsgeeasedLmnLSPFevKnLLqhILsgkeFGVerslR ++M++EL+++ g++++ dL++LSP+evK+LL++IL++++ hk07496 879 HAMEYELQIR---GGDKPALDLYQLSPSEVKQLLLDILQPQQ-------- 917 pieSlasspaiSiheighlGatktErtgIakLkSEiKQvefRrlaietes hk07496 - -------------------------------------------------- - qvsqgvSlsAdlkssssstPsssvspsssdsaghhlswdeRQGqWaveek ++++W hk07496 918 ----------------------------------------NGRCW----- 922 LttlrRRrLDGALNRVPkgFYqrVWkILQkCPqGLsieGkvLpsspLDsD l+RR++DG+LNR+P+gFY+rVW+IL+++P+G++++Gk+Lp++p hk07496 923 ---LNRRQIDGSLNRTPTGFYDRVWQILERTPNGIIVAGKHLPQQP---- 965 vtlrEMTpGElkFaLlVEsvLnrIdqPEYRQllVEaLmVLtlvadrNpeL tl++MT++E++F+LlVE++L++IdqP YRQ++VE+LmV+++v++rNpeL hk07496 966 -TLSDMTMYEMNFSLLVEDTLGNIDQPQYRQIVVELLMVVSIVLERNPEL 1014 siggiIdlDklvheAnqLFlkdqkslkaddtehCakikDGkeqqqaasGm ++++++dlD+lv+eA+ +F+kdq++lk+++ hk07496 1015 EFQDKVDLDRLVKEAFNEFQKDQSRLKEIE-------------------- 1044 LekdpkagictsFYdsaPsGkyGTmTYLsrAvanllLeqevlPssEeeca k++++tsFY+++P+Gk+GT++YL++Av+nllLe+ev+P + + c+ hk07496 1045 -----KQDDMTSFYNTPPLGKRGTCSYLTKAVMNLLLEGEVKPNNDDPCL 1089 v<-* + hk07496 1090 I 1090 PF05682.3.fs: domain 2 of 3, from 716 to 917: score 386.4, E = 3.9e-113 *->efgetdteeLvsqLretenLqeQadlLyiLlkrkGpdFdTaLgfknk e+ +++t+e++++L+++++L++Qa+lL+iLlkr+Gp+F hk07496 716 EWKDKPTHEILQKLNDCSCLASQAILLGILLKREGPNF--------- 753 seenatPnannaGmLeeqqgvTVrdlLeeLYekAGslklWglVRYisGll +++++TV+d++e++Y++AGs+klW +VR++++ll hk07496 754 ----------------ITKEGTVSDHIERVYRRAGSQKLWSVVRRAASLL 787 rkrvesLaeavTdlLvhgKqlTVGlppePrEkvIsaPLPpeelknlIyea k+v+sLa+ +T +Lv gKq+T+G++++ +E+vIs+PL+p++++n+Iy++ hk07496 788 SKVVDSLAPSITNVLVQGKQVTLGAFGH-EEEVISNPLSPRVIQNIIYYK 836 cgeyDiseAVLTQEvvvYLamlIrtqPeLFsgmLrLRIGlIIqvMatELa c+++D++eAV++ E+v++++++I+++PeLFsgmL++RIG+II++M++EL+ hk07496 837 CNTHDEREAVIQKELVIHIGWIISNNPELFSGMLKIRIGWIIHAMEYELQ 886 rsLncsgeeasedLmnLSPFevKnLLqhILsgke<-* ++ g++++ dL++LSP+evK+LL++IL++++ hk07496 887 IR---GGDKPALDLYQLSPSEVKQLLLDILQPQQ 917 PF05682.3.fs: domain 3 of 3, from 918 to 1090: score 371.0, E = 1.7e-108 *->RQGqWaveekLttlrRRrLDGALNRVPkgFYqrVWkILQkCPqGLsi ++++W l+RR++DG+LNR+P+gFY+rVW+IL+++P+G+++ hk07496 918 NGRCW--------LNRRQIDGSLNRTPTGFYDRVWQILERTPNGIIV 956 eGkvLpsspLDsDvtlrEMTpGElkFaLlVEsvLnrIdqPEYRQllVEaL +Gk+Lp++p tl++MT++E++F+LlVE++L++IdqP YRQ++VE+L hk07496 957 AGKHLPQQP-----TLSDMTMYEMNFSLLVEDTLGNIDQPQYRQIVVELL 1001 mVLtlvadrNpeLsiggiIdlDklvheAnqLFlkdqkslkaddtehCaki mV+++v++rNpeL++++++dlD+lv+eA+ +F+kdq++lk+++ hk07496 1002 MVVSIVLERNPELEFQDKVDLDRLVKEAFNEFQKDQSRLKEIE------- 1044 kDGkeqqqaasGmLekdpkagictsFYdsaPsGkyGTmTYLsrAvanllL k++++tsFY+++P+Gk+GT++YL++Av+nllL hk07496 1045 ------------------KQDDMTSFYNTPPLGKRGTCSYLTKAVMNLLL 1076 eqevlPssEeecav<-* e+ev+P + + c++ hk07496 1077 EGEVKPNNDDPCLI 1090 //