hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-01590889/chunk_1/iprscan-20080813-01590889.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk07633 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02864.6.fs STAT protein, DNA binding domain 505.7 5.1e-166 1 PF02864.6.ls STAT protein, DNA binding domain 507.6 1.3e-149 1 PF01017.11.ls STAT protein, all-alpha domain 231.0 2.4e-66 1 PF01017.11.fs STAT protein, all-alpha domain 229.2 8.5e-66 1 PF02865.8.ls STAT protein, protein interaction domain 221.5 1.7e-63 1 PF02865.8.fs STAT protein, protein interaction domain 219.6 6.7e-63 1 PF00017.14.fs SH2 domain 32.5 1.2e-10 1 PF00017.14.ls SH2 domain 30.2 7e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02865.8.fs 1/1 67 190 .. 1 129 [] 219.6 6.7e-63 PF02865.8.ls 1/1 67 190 .. 1 129 [] 221.5 1.7e-63 PF01017.11.ls 1/1 204 379 .. 1 208 [] 231.0 2.4e-66 PF01017.11.fs 1/1 204 379 .. 1 208 [] 229.2 8.5e-66 PF02864.6.ls 1/1 381 631 .. 1 269 [] 507.6 1.3e-149 PF02864.6.fs 1/1 381 631 .. 1 269 [] 505.7 5.1e-166 PF00017.14.ls 1/1 637 713 .. 1 82 [] 30.2 7e-06 PF00017.14.fs 1/1 642 680 .. 1 42 [. 32.5 1.2e-10 Alignments of top-scoring domains: PF02865.8.fs: domain 1 of 1, from 67 to 190: score 219.6, E = 6.7e-63 *->sqWnqlQqLdpkfLeQrvqqLYddsFlPmEvRhyLAqWIEsQdWeea +qW++lQ+Ld++f++Q ++qLY++s+lP+++R+yLA WIE+Q+W+ea hk07633 67 AQWEMLQNLDSPFQDQ-LHQLYSHSLLPVDIRQYLAVWIEDQNWQEA 112 aleNpedeskAtvLfhnLlqqLqqqasrqsgegdnfLlqhnLrvkikrnL al++ d+skAt+Lf+++l+qL+++++r+s++++++LlqhnLr k++r++ hk07633 113 ALGS--DDSKATMLFFHFLDQLNYECGRCSQDPESLLLQHNLR-KFCRDI 159 qsiyqedPvelariIrniLreEqrilqeAqra<-* q +++dP++la++I+n+L eE+ril++Aqra hk07633 160 QP-FSQDPTQLAEMIFNLLLEEKRILIQAQRA 190 PF02865.8.ls: domain 1 of 1, from 67 to 190: score 221.5, E = 1.7e-63 *->sqWnqlQqLdpkfLeQrvqqLYddsFlPmEvRhyLAqWIEsQdWeea +qW++lQ+Ld++f++Q ++qLY++s+lP+++R+yLA WIE+Q+W+ea hk07633 67 AQWEMLQNLDSPFQDQ-LHQLYSHSLLPVDIRQYLAVWIEDQNWQEA 112 aleNpedeskAtvLfhnLlqqLqqqasrqsgegdnfLlqhnLrvkikrnL al++ d+skAt+Lf+++l+qL+++++r+s++++++LlqhnLr k++r++ hk07633 113 ALGS--DDSKATMLFFHFLDQLNYECGRCSQDPESLLLQHNLR-KFCRDI 159 qsiyqedPvelariIrniLreEqrilqeAqra<-* q +++dP++la++I+n+L eE+ril++Aqra hk07633 160 QP-FSQDPTQLAEMIFNLLLEEKRILIQAQRA 190 PF01017.11.ls: domain 1 of 1, from 204 to 379: score 231.0, E = 2.4e-66 *->sekqleleskllelrNSCNPPVVQGIGPIhrVqdteqeikaLedlQD + +q+e+es++l+lr +++++++++i++L+d+QD hk07633 204 ESQQHEIESRILDLR--------------AMMEKLVKSISQLKDQQD 236 efdfryktslliqsqaeegqdlNglkllapsaatrQeqvSsllLqemlns f+fryk iq+ +++ + l+p+ + eq Lqe+ln+ hk07633 237 VFCFRYK----IQAKGKT----PS---LDPH--QTKEQ---KILQETLNE 270 LdqkRkevvsklqelLgelealqelllddELaeWKRRQQiACIGGPpNeg Ld++Rkev++++++lLg+l++l+elll+ +L+eWK +QQ+ACI +P + hk07633 271 LDKRRKEVLDASKALLGRLTTLIELLLP-KLEEWKAQQQKACIRAPI-DH 318 sLDqLQnWfTsLAeilfQlRQqlKkLeeLsqkvtYegDpiekqrahLeer +L+qL++WfT+ A++lf+lRQ+lK+L++Ls v+Y Dp++k++++ +++ hk07633 319 GLEQLETWFTAGAKLLFHLRQLLKELKGLSCLVSYQDDPLTKGVDLRNAQ 368 vtellrnLvks<-* vtell++L+++ hk07633 369 VTELLQRLLHR 379 PF01017.11.fs: domain 1 of 1, from 204 to 379: score 229.2, E = 8.5e-66 *->sekqleleskllelrNSCNPPVVQGIGPIhrVqdteqeikaLedlQD + +q+e+es++l+lr +++++++++i++L+d+QD hk07633 204 ESQQHEIESRILDLR--------------AMMEKLVKSISQLKDQQD 236 efdfryktslliqsqaeegqdlNglkllapsaatrQeqvSsllLqemlns f+fryk iq+ +++ + l+p+ + eq Lqe+ln+ hk07633 237 VFCFRYK----IQAKGKT----PS---LDPH--QTKEQ---KILQETLNE 270 LdqkRkevvsklqelLgelealqelllddELaeWKRRQQiACIGGPpNeg Ld++Rkev++++++lLg+l++l+elll+ +L+eWK +QQ+ACI +P + hk07633 271 LDKRRKEVLDASKALLGRLTTLIELLLP-KLEEWKAQQQKACIRAPI-DH 318 sLDqLQnWfTsLAeilfQlRQqlKkLeeLsqkvtYegDpiekqrahLeer +L+qL++WfT+ A++lf+lRQ+lK+L++Ls v+Y Dp++k++++ +++ hk07633 319 GLEQLETWFTAGAKLLFHLRQLLKELKGLSCLVSYQDDPLTKGVDLRNAQ 368 vtellrnLvks<-* vtell++L+++ hk07633 369 VTELLQRLLHR 379 PF02864.6.ls: domain 1 of 1, from 381 to 631: score 507.6, E = 1.3e-149 *->FvVEkQPCMPthPqRPlVLKTqtkFtakvRLLVklqeLNyqlkpkvv FvVE+QPCMP++P+RPl+LKT++kFt+++RLLV+lqe+N++l+++v+ hk07633 381 FVVETQPCMPQTPHRPLILKTGSKFTVRTRLLVRLQEGNESLTVEVS 427 idkivsekqakrgvvrntqfrkfnilgtntGkilNmeesmegslaaefrs id++++ +g frkfnil++n k+l++e++++++l+++f++ hk07633 428 IDRNPPQL---QG------FRKFNILTSNQ-KTLTPEKGQSQGLIWDFGY 467 lqlkeqklkkikRanrkGpesVTEElhailFetqftvqgnkLkidLeTlS l+l eq++++ +++ +kGp++VTEElh+i+F++++t+qg Lk++L+T++ hk07633 468 LTLVEQRSGGSGKGSNKGPLGVTEELHIISFTVKYTYQG--LKQELKTDT 515 LPVVVIsngsQlpnAwAsILWyNaltedprNlvFFlvPpkatWaqLseaL LPVV+Isn++Ql++AwAs+LW+N+l+ + +N++FF++Ppka+W++L++aL hk07633 516 LPVVIISNMNQLSIAWASVLWFNLLSPNLQNQQFFSNPPKAPWSLLGPAL 565 swqFsSevgsNRGLnsdqLgfLaeKLfgqnssslEdysggsisWsqFcKE swqFsS+vg RGLnsdqL +L+ KLfgqn +++ ++sW++F K+ hk07633 566 SWQFSSYVG--RGLNSDQLSMLRNKLFGQNCR----TEDPLLSWADFTKR 609 nlpgksFtFWqWldaILdLvKk<-* ++p+++++FW+Wld+IL+Lv++ hk07633 610 ESPPGKLPFWTWLDKILELVHD 631 PF02864.6.fs: domain 1 of 1, from 381 to 631: score 505.7, E = 5.1e-166 *->FvVEkQPCMPthPqRPlVLKTqtkFtakvRLLVklqeLNyqlkpkvv FvVE+QPCMP++P+RPl+LKT++kFt+++RLLV+lqe+N++l+++v+ hk07633 381 FVVETQPCMPQTPHRPLILKTGSKFTVRTRLLVRLQEGNESLTVEVS 427 idkivsekqakrgvvrntqfrkfnilgtntGkilNmeesmegslaaefrs id++++ +g frkfnil++n k+l++e++++++l+++f++ hk07633 428 IDRNPPQL---QG------FRKFNILTSNQ-KTLTPEKGQSQGLIWDFGY 467 lqlkeqklkkikRanrkGpesVTEElhailFetqftvqgnkLkidLeTlS l+l eq++++ +++ +kGp++VTEElh+i+F++++t+qg Lk++L+T++ hk07633 468 LTLVEQRSGGSGKGSNKGPLGVTEELHIISFTVKYTYQG--LKQELKTDT 515 LPVVVIsngsQlpnAwAsILWyNaltedprNlvFFlvPpkatWaqLseaL LPVV+Isn++Ql++AwAs+LW+N+l+ + +N++FF++Ppka+W++L++aL hk07633 516 LPVVIISNMNQLSIAWASVLWFNLLSPNLQNQQFFSNPPKAPWSLLGPAL 565 swqFsSevgsNRGLnsdqLgfLaeKLfgqnssslEdysggsisWsqFcKE swqFsS+vg RGLnsdqL +L+ KLfgqn +++ ++sW++F K+ hk07633 566 SWQFSSYVG--RGLNSDQLSMLRNKLFGQNCR----TEDPLLSWADFTKR 609 nlpgksFtFWqWldaILdLvKk<-* ++p+++++FW+Wld+IL+Lv++ hk07633 610 ESPPGKLPFWTWLDKILELVHD 631 PF00017.14.ls: domain 1 of 1, from 637 to 713: score 30.2, E = 7e-06 *->WyhGkIsR...keAErlLlnpggkdGtFLvReSestpGdYtLSVrdd W G I + + Er+Ll+ + GtFL+R+Ses++G++t+S++ hk07633 637 WNDGRIMGfvsRSQERRLLK-KTMSGTFLLRFSESSEGGITCSWVEH 682 gp....qgdrVkHyrIqsldnggyyitggvkFssLpeLvehY<-* ++++ +++V+ y + l+ + L e++ hY hk07633 683 QDddkvLIYSVQPYTKEVLQSL-------P----LTEIIRHY 713 PF00017.14.fs: domain 1 of 1, from 642 to 680: score 32.5, E = 1.2e-10 *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVr<-* ++G++sR++ rlL++ + GtFL+R+Ses++G++t+S++ hk07633 642 -IMGFVSRSQERRLLKK--TMSGTFLLRFSESSEGGITCSWV 680 //