hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-02043456/chunk_1/iprscan-20080813-02043456.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk07660 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 544.0 1.4e-160 1 PF07714.7.fs Protein tyrosine kinase 542.1 5.2e-160 1 PF00069.15.ls Protein kinase domain 163.6 4.5e-46 1 PF00069.15.fs Protein kinase domain 161.8 7.6e-46 1 PF07679.6.fs Immunoglobulin I-set domain 111.8 5.2e-32 3 PF00047.15.ls Immunoglobulin domain 102.8 9.3e-28 3 PF00047.15.fs Immunoglobulin domain 97.1 4.7e-26 3 PF07679.6.ls Immunoglobulin I-set domain 90.2 5.8e-24 3 PF07686.7.fs Immunoglobulin V-set domain 35.3 1.8e-09 3 PF07686.7.ls Immunoglobulin V-set domain 37.3 5e-08 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/3 31 112 .. 1 96 [] 6.7 0.0003 PF00047.15.ls 1/3 42 97 .. 1 65 [] 28.0 3.2e-05 PF00047.15.fs 1/3 42 97 .. 1 65 [] 26.2 2e-06 PF07679.6.fs 1/3 57 112 .. 31 96 .] 20.3 2.5e-05 PF07679.6.ls 2/3 153 241 .. 1 96 [] 47.6 3.9e-11 PF00047.15.fs 2/3 165 226 .. 1 65 [] 36.7 2.6e-09 PF00047.15.ls 2/3 165 226 .. 1 65 [] 38.6 2e-08 PF07679.6.fs 2/3 166 241 .. 16 96 .] 54.6 2.6e-15 PF07686.7.fs 3/3 249 353 .. 1 141 [] 20.0 3.5e-05 PF07679.6.ls 3/3 249 352 .. 1 96 [] 35.9 1.3e-07 PF07686.7.ls 3/3 249 353 .. 1 141 [] 21.7 0.00032 PF07679.6.fs 3/3 256 352 .. 7 96 .] 37.0 3.5e-10 PF00047.15.ls 3/3 264 337 .. 1 65 [] 36.2 1e-07 PF00047.15.fs 3/3 264 337 .. 1 65 [] 34.3 1.2e-08 PF00069.15.fs 1/1 470 746 .. 1 287 [] 161.8 7.6e-46 PF00069.15.ls 1/1 470 746 .. 1 287 [] 163.6 4.5e-46 PF07714.7.ls 1/1 470 746 .. 1 272 [] 544.0 1.4e-160 PF07714.7.fs 1/1 470 746 .. 1 272 [] 542.1 5.2e-160 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 3, from 31 to 112: score 6.7, E = 0.0003 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+ + ++ V G+ + + C+ + + ++ W++dG +l + hk07660 31 PV---EVESFLVHPGDLLQLRCRLRDD-VQSINWLRDGVQLAE---- 69 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< s r ++t ++ ++++ p+DsG+Y Cv + ++G++++ ++++V hk07660 70 SNRTRITGEE------VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 112 -* hk07660 - - PF00047.15.ls: domain 1 of 3, from 42 to 97: score 28.0, E = 3.2e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ + L+C+ +++ +++Wlr+g +l ++++++++ ++ hk07660 42 GDLLQLRCRL---RDDVQSINWLRDGVqLAeSNRTRITGEE------ 79 tsLtitnvtpeDggtYtCvv<-* + +++ p D+g Y Cv hk07660 80 --VEVQDSVPADSGLYACVT 97 PF00047.15.fs: domain 1 of 3, from 42 to 97: score 26.2, E = 2e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ + L+C+ +++ +++Wlr+g +l ++++++++ ++ hk07660 42 GDLLQLRCRL---RDDVQSINWLRDGVqLAeSNRTRITGEE------ 79 tsLtitnvtpeDggtYtCvv<-* + +++ p D+g Y Cv hk07660 80 --VEVQDSVPADSGLYACVT 97 PF07679.6.fs: domain 1 of 3, from 57 to 112: score 20.3, E = 2.5e-05 *->tVsWfKdGqplssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkY ++ W++dG +l + s r ++t ++ ++++ p+DsG+Y hk07660 57 SINWLRDGVQLAE----SNRTRITGEE------VEVQDSVPADSGLY 93 tCvAtNsaGeaeasaeLtV<-* Cv + ++G++++ ++++V hk07660 94 ACVTSSPSGSDTTYFSVNV 112 PF07679.6.ls: domain 2 of 3, from 153 to 241: score 47.6, E = 3.9e-11 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp k ++k++ v ++ ++++f C +GtP Pt W+K+G++ ++ hk07660 153 EKMEKKLHAVPAA--KTVKFKCPSSGTPNPTLRWLKNGKEFKP---- 193 sdr...fkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeL ++r +++kv+y + +++ v p+D G YtC+++N++G+ + +L hk07660 194 DHRiggYKVRYAT----WSIIMDSVVPSDKGNYTCIVENEYGSINHTYQL 239 tV<-* V hk07660 240 DV 241 PF00047.15.fs: domain 2 of 3, from 165 to 226: score 36.7, E = 2.6e-09 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++v++ C + +g+p +t++Wl+ngk+ ++++++ + + ++ hk07660 165 AKTVKFKCPS--SGTPNPTLRWLKNGKeFKpDHRIGGYKVRYATWS- 208 tsLtitnvtpeDggtYtCvv<-* + +v p+D g+YtC v hk07660 209 --IIMDSVVPSDKGNYTCIV 226 PF00047.15.ls: domain 2 of 3, from 165 to 226: score 38.6, E = 2e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++v++ C + +g+p +t++Wl+ngk+ ++++++ + + ++ hk07660 165 AKTVKFKCPS--SGTPNPTLRWLKNGKeFKpDHRIGGYKVRYATWS- 208 tsLtitnvtpeDggtYtCvv<-* + +v p+D g+YtC v hk07660 209 --IIMDSVVPSDKGNYTCIV 226 PF07679.6.fs: domain 2 of 3, from 166 to 241: score 54.6, E = 2.6e-15 *->esarfeCkVtGtPePtVsWfKdGqplssvllpsdr...fkvtydgGs ++++f C +GtP Pt W+K+G++ ++ ++r +++kv+y hk07660 166 KTVKFKCPSSGTPNPTLRWLKNGKEFKP----DHRiggYKVRYAT-- 206 gtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<-* + +++ v p+D G YtC+++N++G+ + +L V hk07660 207 --WSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 241 PF07686.7.fs: domain 3 of 3, from 249 to 353: score 20.0, E = 3.5e-05 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++ +++ p+ tva+G +v++ C++ +d+ hk07660 249 PI-LQAGLPA------------NKTVALGSNVEFMCKVY---SDP-- 277 ssgtfsiyWyrqqpp........gkgpeliiisyysyystsegngtvger ++ +i+W + + ++++ ++++ p i +t +v hk07660 278 --QP-HIQWLK-HIEvngskigpDNLPYVQI------LKTA----GVNTT 313 fkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLt k+ L+++n++ +D G Y+C ns + ++ +Lt hk07660 314 DKEMEV-----------LHLRNVSFEDAGEYTCLAGNS-IGLSHHSAWLT 351 Vl<-* Vl hk07660 352 VL 353 PF07679.6.ls: domain 3 of 3, from 249 to 352: score 35.9, E = 1.3e-07 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKd....Gqpls P ++ + +V+ G+ ++f CkV+ +P+P ++W+K + +G+++ hk07660 249 PILQAGLpANKTVALGSNVEFMCKVYSDPQPHIQWLKHievnGSKIG 295 svllpsdrfkvtydgGsgtyt......LtIsnvqpdDsGkYtCvAtNsaG ++ lp +++ + + ++t+++ + L +nv +D+G+YtC A Ns G hk07660 296 PDNLP--YVQILKTA-GVNTTdkemevLHLRNVSFEDAGEYTCLAGNSIG 342 eaeasaeLtV<-* + sa LtV hk07660 343 LSHHSAWLTV 352 PF07686.7.ls: domain 3 of 3, from 249 to 353: score 21.7, E = 0.00032 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss ++ +++ p+ tva+G +v++ C++ +d+ hk07660 249 PI-LQAGLPA------------NKTVALGSNVEFMCKVY---SDP-- 277 ssgtfsiyWyrqqpp........gkgpeliiisyysyystsegngtvger ++ +i+W + + ++++ ++++ p i +t +v hk07660 278 --QP-HIQWLK-HIEvngskigpDNLPYVQI------LKTA----GVNTT 313 fkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLt k+ L+++n++ +D G Y+C ns + ++ +Lt hk07660 314 DKEMEV-----------LHLRNVSFEDAGEYTCLAGNS-IGLSHHSAWLT 351 Vl<-* Vl hk07660 352 VL 353 PF07679.6.fs: domain 3 of 3, from 256 to 352: score 37.0, E = 3.5e-10 *->pkdveVqeGesarfeCkVtGtPePtVsWfKd....Gqplssvllpsd p + +V+ G+ ++f CkV+ +P+P ++W+K + +G+++ ++ lp hk07660 256 PANKTVALGSNVEFMCKVYSDPQPHIQWLKHievnGSKIGPDNLP-- 300 rfkvtydgGsgtyt......LtIsnvqpdDsGkYtCvAtNsaGeaeasae +++ + + ++t+++ + L +nv +D+G+YtC A Ns G + sa hk07660 301 YVQILKTA-GVNTTdkemevLHLRNVSFEDAGEYTCLAGNSIGLSHHSAW 349 LtV<-* LtV hk07660 350 LTV 352 PF00047.15.ls: domain 3 of 3, from 264 to 337: score 36.2, E = 1e-07 *->GesvtLtCsvsgfgppdvtvtWlr....ngk.lt.gvlvtssenngd G+ v + C v ++p+++++Wl++ + ng ++++++l ++ ++ hk07660 264 GSNVEFMCKV--YSDPQPHIQWLKhievNGSkIGpDNLPYVQILKTA 308 styqt.....sLtitnvtpeDggtYtCvv<-* ++ +t+++ ++L+++nv+ eD+g+YtC + hk07660 309 GVNTTdkemeVLHLRNVSFEDAGEYTCLA 337 PF00047.15.fs: domain 3 of 3, from 264 to 337: score 34.3, E = 1.2e-08 *->GesvtLtCsvsgfgppdvtvtWlr....ngk.lt.gvlvtssenngd G+ v + C v ++p+++++Wl++ + ng ++++++l ++ ++ hk07660 264 GSNVEFMCKV--YSDPQPHIQWLKhievNGSkIGpDNLPYVQILKTA 308 styqt.....sLtitnvtpeDggtYtCvv<-* ++ +t+++ ++L+++nv+ eD+g+YtC + hk07660 309 GVNTTdkemeVLHLRNVSFEDAGEYTCLA 337 PF00069.15.fs: domain 1 of 1, from 470 to 746: score 161.8, E = 7.6e-46 *->yelleklGsGsfGtVykakhkgtgk.......iVAvKiikkrkeksk ++l+++lG+G fG+V +a +g k+++++ ++VAvK +k + ++++ hk07660 470 LVLGKPLGEGCFGQVVLAEAIGLDKdkpnrvtKVAVKMLKSDATEKD 516 kdktarrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvl sE +++k++++H+NI+ l+++++ ++ ly++ Ey+ +G hk07660 517 LSDLI---SEMEMMKMIgKHKNIINLLGACTQDGPLYVIVEYASKG---- 559 dLfdyls.......e......trrkgpllfsedeakkialQilrgleYLH L +yl+ +++++ e +++ + l s +++ ++a+Q++rg+eYL hk07660 560 NLREYLQarrppglEycynpsHNPEEQL--SSKDLVSCAYQVARGMEYLA 607 sngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.sss.lttfv s+++iHRDL N+L+ +++v KiaDFGlA+ + +++ + ++t hk07660 608 SKKCIHRDLAARNVLVTEDNVM----KIADFGLARDIHhIdYYKkTTNGR 653 GTpwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.l +mAPE l ++ y++ +DvWS+Gv+l+e +t G P++g + hk07660 654 LPVKWMAPEALF-DRIYTHQSDVWSFGVLLWEIFTlGGSPYPGV---PvE 699 dqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkD ++l+++ + + ++++ e+ +++c++ hk07660 700 ELFKLLKEGHRMDKPSNCT-----------------NELYMMMRDCWHAV 732 PskRltaeeilqHPwf<-* Ps+R+t+++++++ + hk07660 733 PSQRPTFKQLVED--L 746 PF00069.15.ls: domain 1 of 1, from 470 to 746: score 163.6, E = 4.5e-46 *->yelleklGsGsfGtVykakhkgtgk.......iVAvKiikkrkeksk ++l+++lG+G fG+V +a +g k+++++ ++VAvK +k + ++++ hk07660 470 LVLGKPLGEGCFGQVVLAEAIGLDKdkpnrvtKVAVKMLKSDATEKD 516 kdktarrlsEiqilkrL.sHpNIvrlidvfedkdhlylVlEycegGLrvl sE +++k++++H+NI+ l+++++ ++ ly++ Ey+ +G hk07660 517 LSDLI---SEMEMMKMIgKHKNIINLLGACTQDGPLYVIVEYASKG---- 559 dLfdyls.......e......trrkgpllfsedeakkialQilrgleYLH L +yl+ +++++ e +++ + l s +++ ++a+Q++rg+eYL hk07660 560 NLREYLQarrppglEycynpsHNPEEQL--SSKDLVSCAYQVARGMEYLA 607 sngiiHRDLKPeNILldnngvvdaflKiaDFGlAkkls.t.sss.lttfv s+++iHRDL N+L+ +++v KiaDFGlA+ + +++ + ++t hk07660 608 SKKCIHRDLAARNVLVTEDNVM----KIADFGLARDIHhIdYYKkTTNGR 653 GTpwYmAPEvllggngygtkvDvWSlGvilyellt.GkpPFsgevqds.l +mAPE l ++ y++ +DvWS+Gv+l+e +t G P++g + hk07660 654 LPVKWMAPEALF-DRIYTHQSDVWSFGVLLWEIFTlGGSPYPGV---PvE 699 dqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkD ++l+++ + + ++++ e+ +++c++ hk07660 700 ELFKLLKEGHRMDKPSNCT-----------------NELYMMMRDCWHAV 732 PskRltaeeilqHPwf<-* Ps+R+t+++++++ + hk07660 733 PSQRPTFKQLVED--L 746 PF07714.7.ls: domain 1 of 1, from 470 to 746: score 544.0, E = 1.4e-160 *->lklgkkLGeGaFGeVykGtlkg...sgdgteikVAVKtLkeigasee l+lgk LGeG+FG V+++++ g ++++ + +kVAVK+Lk +a+e+ hk07660 470 LVLGKPLGEGCFGQVVLAEAIGldkDKPNRVTKVAVKMLKS-DATEK 515 eieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymeg + + d+++E+++Mk +G+H+Ni++LlG+ct+ ++P ly+++Ey+ + hk07660 516 D--LSDLISEMEMMKMIGKHKNIINLLGACTQ-DGP----LYVIVEYASK 558 GdLldfLrkhr.............egrpLtlkdLlsfalQiAkGMeYLes G+L+++L+++r+++ + +++++++++L+ kdL+s a+Q+A+GMeYL+s hk07660 559 GNLREYLQARRppgleycynpshnPEEQLSSKDLVSCAYQVARGMEYLAS 608 knfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvk k+++HRDLAARN+LV+e++v+KI+DFGLaRdi++ dyY +k+++g+lPvk hk07660 609 KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY-KKTTNGRLPVK 657 WmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlelly WmAPE+l+++++t++SDVWSFGVlLWEiftlG++P Ypg+++ee+ +ll hk07660 658 WMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP-YPGVPVEELFKLL- 705 edGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++G+R+++P nC+ elY++M++CW++ P++RPtF++lve+L hk07660 706 KEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 746 PF07714.7.fs: domain 1 of 1, from 470 to 746: score 542.1, E = 5.2e-160 *->lklgkkLGeGaFGeVykGtlkg...sgdgteikVAVKtLkeigasee l+lgk LGeG+FG V+++++ g ++++ + +kVAVK+Lk +a+e+ hk07660 470 LVLGKPLGEGCFGQVVLAEAIGldkDKPNRVTKVAVKMLKS-DATEK 515 eieredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymeg + + d+++E+++Mk +G+H+Ni++LlG+ct+ ++P ly+++Ey+ + hk07660 516 D--LSDLISEMEMMKMIGKHKNIINLLGACTQ-DGP----LYVIVEYASK 558 GdLldfLrkhr.............egrpLtlkdLlsfalQiAkGMeYLes G+L+++L+++r+++ + +++++++++L+ kdL+s a+Q+A+GMeYL+s hk07660 559 GNLREYLQARRppgleycynpshnPEEQLSSKDLVSCAYQVARGMEYLAS 608 knfvHRDLAARNcLVsenlvVKIsDFGLaRdiynddyYvrkkgggklPvk k+++HRDLAARN+LV+e++v+KI+DFGLaRdi++ dyY +k+++g+lPvk hk07660 609 KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYY-KKTTNGRLPVK 657 WmAPEslkygkFtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlelly WmAPE+l+++++t++SDVWSFGVlLWEiftlG++P Ypg+++ee+ +ll hk07660 658 WMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP-YPGVPVEELFKLL- 705 edGyRLprPenCPdelYdlMlqCWaedPedRPtFselveeL<-* ++G+R+++P nC+ elY++M++CW++ P++RPtF++lve+L hk07660 706 KEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDL 746 //