hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-02043456/chunk_1/iprscan-20080813-02043456.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk07660 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00219 532.3 2e-155 1 SM00220 194.5 9.9e-54 1 SM00408 149.1 4.5e-40 3 SM00409 128.2 8.8e-34 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/3 34 113 .. 1 58 [] 27.8 0.0015 SM00408 1/3 40 102 .. 1 56 [] 55.2 8.6e-12 SM00409 2/3 157 242 .. 1 58 [] 39.5 4.6e-07 SM00408 2/3 163 231 .. 1 56 [] 46.1 4.6e-09 SM00409 3/3 256 353 .. 1 58 [] 61.0 1.5e-13 SM00408 3/3 262 342 .. 1 56 [] 47.8 1.4e-09 SM00219 1/1 470 746 .. 1 280 [] 532.3 2e-155 SM00220 1/1 470 750 .. 1 231 [] 194.5 9.9e-54 Alignments of top-scoring domains: SM00409: domain 1 of 3, from 34 to 113: score 27.8, E = 0.0015 *->pp.vtvkeGesvtLtC.as....titWy..................L ++ +v +G+ ++L+C+ ++ +i W++++ + +++++ ++ hk07660 34 VEsFLVHPGDLLQLRCrLRddvqSINWLrdgvqlaesnrtritgeeV 80 tI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++ p+Ds G Y C+ +++sgs++ + + V+ hk07660 81 EVqDSVPADS---GLYACVTSspSGSDTT--YFSVNVS 113 SM00408: domain 1 of 3, from 40 to 102: score 55.2, E = 8.6e-12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv ++G+ ++L+C+ d+v +I Wl++g +l+++++++ +g ++++++ hk07660 40 HPGDLLQLRCR-LRDDVQSINWLRdGVQLAesnrtriTGEEVEVQDS 85 sleDsGlYtCvArNsvg<-* ++DsGlY+Cv +++ g hk07660 86 VPADSGLYACVTSSPSG 102 SM00409: domain 2 of 3, from 157 to 242: score 39.5, E = 4.6e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. + + v + +v+++C+ s+++++t++W+++++ +++++ ++ + + hk07660 157 KKlHAVPAAKTVKFKCpSSgtpnpTLRWLkngkefkpdhriggykvr 203 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++++++v p+D G+YtC +++ +gs+ + +L V hk07660 204 yatwsIIMdSVVPSDK---GNYTCIVEneYGSINH--TYQLDVV 242 SM00408: domain 2 of 3, from 163 to 231: score 46.1, E = 4.6e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +V ++Cp sg p+p+ +Wlk+gk+ ++++ ++ + + ++ hk07660 163 PAAKTVKFKCPSSGTPNPTLRWLKnGKEFKpdhriggykvryATWSI 209 tiknvsleDsGlYtCvArNsvg<-* +v ++D G+YtC+++N+ g hk07660 210 IMDSVVPSDKGNYTCIVENEYG 231 SM00409: domain 3 of 3, from 256 to 353: score 61.0, E = 1.5e-13 *->pp.vtvkeGesvtLtC.as.....titWy.................. p + tv +G++v++ C++ +++ ++i+W+++ ++++ ++++ + hk07660 256 PAnKTVALGSNVEFMCkVYsdpqpHIQWLkhievngskigpdnlpyv 302 .................LtI.nvtpeDsesgGtYtCaat.sgsasseqgt + ++ + +++++ L+++nv++eD+ G+YtC a +s s +++ hk07660 303 qilktagvnttdkemevLHLrNVSFEDA---GEYTCLAGnSIGLSH-HSA 348 tLtVl<-* +LtVl hk07660 349 WLTVL 353 SM00408: domain 3 of 3, from 262 to 342: score 47.8, E = 1.4e-09 *->leGqsVtLtCpasgdpvpnItWlk.....gkplp............. G +V++ C++ dp p I+Wlk+ + +g+++ +++ + + ++ hk07660 262 ALGSNVEFMCKVYSDPQPHIQWLKhievnGSKIGpdnlpyvqilkta 308 .......sgstLtiknvsleDsGlYtCvArNsvg<-* + +++++ L+++nvs+eD+G+YtC+A Ns+g hk07660 309 gvnttdkEMEVLHLRNVSFEDAGEYTCLAGNSIG 342 SM00219: domain 1 of 1, from 470 to 746: score 532.3, E = 2e-155 *->ltlgkkLGeGaFGeVykGtlk..........ieVAVKtLkeda.... l+lgk LGeG+FG+V+++++++ +++++++ ++VAVK+Lk+da++++ hk07660 470 LVLGKPLGEGCFGQVVLAEAIgldkdkpnrvTKVAVKMLKSDAtekd 516 keeFlrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymeg + ++++E+++Mk++G kH+Ni++LlG+ct++ +Pl++++Ey+++ hk07660 517 LSDLISEMEMMKMIG-KHKNIINLLGACTQD-------GPLYVIVEYASK 558 GdLldyLrknrpk...............lslsdLlsfAlQIAkGMeYLes G+L++yL+++rp + + +++++++++ls +dL+s A+Q+A+GMeYL+s hk07660 559 GNLREYLQARRPPgleycynpshnpeeqLSSKDLVSCAYQVARGMEYLAS 608 knfvHRDLAARNcLvgenkvvKIsDFGLsRdlyddDkkGeskdyYrkkgg k+++HRDLAARN+Lv+e++v+KI+DFGL+Rd+++ dyY+k++ hk07660 609 KKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI-------DYYKKTT- 650 kggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgei +g+ lP++WmAPE+l+d+++t++SDVWSFGVlLWEiftlG++PYpg hk07660 651 -NGR--LPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPG-- 695 qqfmsneevleylkkGyRlpkPendlpiSsvtCPdelYdlMlqCWaedPe ++ ee++++lk+G+R++kP n C+ elY++M++CW++ P+ hk07660 696 ---VPVEELFKLLKEGHRMDKPSN--------CTNELYMMMRDCWHAVPS 734 dRPtFselverl<-* +RPtF++lve+l hk07660 735 QRPTFKQLVEDL 746 SM00220: domain 1 of 1, from 470 to 750: score 194.5, E = 9.9e-54 *->YellkklGkGaFGkVylardkk.......tgrlvAiKvik....... l+k+lG+G FG+V la ++ ++++++ +vA+K++k++ ++++ hk07660 470 LVLGKPLGEGCFGQVVLAEAIGldkdkpnRVTKVAVKMLKsdatekd 516 .erilrEikiLkk..dHPNIVkLydvfed.dklylVmEyceGdlGdLfdl ++++E++++k+ ++H+NI++L++++ ++ ly++ Ey++ G+L+++ hk07660 517 lSDLISEMEMMKMigKHKNIINLLGACTQdGPLYVIVEYASK--GNLREY 564 lkkrgrrglr..........kvlsE.earfyfrQilsaLeYLHsqgIiHR l+ r+++gl +++++++ +ls ++ + ++Q+++++eYL s++ iHR hk07660 565 LQARRPPGLEycynpshnpeEQLSSkDLVSCAYQVARGMEYLASKKCIHR 614 DLKPeNiLLds..hvKlaDFGlArql.........ttfvGTpeYmAPEvl DL N+L++++++ K+aDFGlAr +++ + +++t +mAPE l hk07660 615 DLAARNVLVTEdnVMKIADFGLARDIhhidyykktTNGRLPVKWMAPEAL 664 ...gYgkpavDiWSlGcilyEllt.GkpPFp..qldlifkkig....... ++ Y++ +D+WS+G++l+E +t G P+p+ ++++fk+++++++ ++ hk07660 665 fdrIYTH-QSDVWSFGVLLWEIFTlGGSPYPgvPVEELFKLLKeghrmdk 713 ....SpeakdLikklLvkdPekRlta.eaLedeldikaHPff<-* +++ + e+ +++ +++ P++R+t +++ e ++ + hk07660 714 psncTNELYMMMRDCWHAVPSQRPTFkQLVE-----DLDRIV 750 //