hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-16575983/chunk_1/iprscan-20090618-16575983.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk08207 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02436.8.ls Conserved carboxylase domain 430.8 1.7e-126 1 PF02436.8.fs Conserved carboxylase domain 428.9 6.6e-126 1 PF02786.7.ls Carbamoyl-phosphate synthase L chain, 353.7 2.8e-103 1 PF02786.7.fs Carbamoyl-phosphate synthase L chain, 351.8 1e-102 1 PF02785.9.fs Biotin carboxylase C-terminal domain 211.8 6.4e-64 1 PF02785.9.ls Biotin carboxylase C-terminal domain 213.7 3.8e-61 1 PF00289.12.fs Carbamoyl-phosphate synthase L chain, 153.2 7e-44 1 PF00289.12.ls Carbamoyl-phosphate synthase L chain, 155.0 1.8e-43 1 PF00364.12.ls Biotin-requiring enzyme 94.3 3.3e-25 1 PF00364.12.fs Biotin-requiring enzyme 92.4 7.1e-25 1 PF00682.9.fs HMGL-like 73.3 1e-19 1 PF00682.9.ls HMGL-like 68.9 1.5e-17 1 PF02222.12.ls ATP-grasp domain -58.3 0.0012 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00289.12.ls 1/1 62 175 .. 1 130 [] 155.0 1.8e-43 PF00289.12.fs 1/1 62 175 .. 1 130 [] 153.2 7e-44 PF02222.12.ls 1/1 177 352 .. 1 191 [] -58.3 0.0012 PF02786.7.fs 1/1 177 394 .. 1 242 [] 351.8 1e-102 PF02786.7.ls 1/1 177 394 .. 1 242 [] 353.7 2.8e-103 PF02785.9.ls 1/1 401 508 .. 1 118 [] 213.7 3.8e-61 PF02785.9.fs 1/1 401 508 .. 1 118 [] 211.8 6.4e-64 PF00682.9.ls 1/1 597 870 .. 1 303 [] 68.9 1.5e-17 PF00682.9.fs 1/1 597 823 .. 1 245 [. 73.3 1e-19 PF02436.8.fs 1/1 887 1095 .. 1 220 [] 428.9 6.6e-126 PF02436.8.ls 1/1 887 1095 .. 1 220 [] 430.8 1.7e-126 PF00364.12.ls 1/1 1136 1203 .. 1 74 [] 94.3 3.3e-25 PF00364.12.fs 1/1 1136 1203 .. 1 74 [] 92.4 7.1e-25 Alignments of top-scoring domains: PF00289.12.ls: domain 1 of 1, from 62 to 175: score 155.0, E = 1.8e-43 *->dikKiLiansGeiaigqarefdysGYEtFderiqavaalkeedLkan ikK+ +an+Geiai+++r++ ++G i++va+++e d hk08207 62 PIKKVMVANRGEIAIRVFRACTELG-------IRTVAIYSEQD--TG 99 tilvnladatvqtgeglADkvYflpksylnvdkIIeaarpdgvlathgGq ++ ++ad+++ +g gl ++++yl ++ II+ a+ +v+a+h+G+ hk08207 100 QMHRQKADEAYLIGRGL-----APVQAYLHIPDIIKVAKENNVDAVHPGY 144 gfLnenveLaeagvleeygvkfiGppaeaIral<-* gfL+e +++a+a+ ++ gv+fiGp++e+ r++ hk08207 145 GFLSERADFAQACQDA--GVRFIGPSPEVVRKM 175 PF00289.12.fs: domain 1 of 1, from 62 to 175: score 153.2, E = 7e-44 *->dikKiLiansGeiaigqarefdysGYEtFderiqavaalkeedLkan ikK+ +an+Geiai+++r++ ++G i++va+++e d hk08207 62 PIKKVMVANRGEIAIRVFRACTELG-------IRTVAIYSEQD--TG 99 tilvnladatvqtgeglADkvYflpksylnvdkIIeaarpdgvlathgGq ++ ++ad+++ +g gl ++++yl ++ II+ a+ +v+a+h+G+ hk08207 100 QMHRQKADEAYLIGRGL-----APVQAYLHIPDIIKVAKENNVDAVHPGY 144 gfLnenveLaeagvleeygvkfiGppaeaIral<-* gfL+e +++a+a+ ++ gv+fiGp++e+ r++ hk08207 145 GFLSERADFAQACQDA--GVRFIGPSPEVVRKM 175 PF02222.12.ls: domain 1 of 1, from 177 to 352: score -58.3, E = 0.0012 *->DRlvqkellAkelGlptpr..faaiesleEelkeaaqelgfPvVlKa D+ + + + ++G+p+ +++ a+i+sl e+ e+ gfP++ Ka hk08207 177 DKVEARAIA-IAAGVPVVPgtDAPITSLH-EAHEFSNTYGFPIIFKA 221 rrgGYDGKGqyvirseadlq........qaleelkqGarggggpliVEef gG G+G v+ s ++l+++ ++ ++al++ g+g+l VE+f hk08207 222 AYGG-GGRGMRVVHSYEELEenytraysEALAAF------GNGALFVEKF 264 V..pFdrElSvlvvRsPsvdGe.tafYPvvetiqedGicrlsvaPapipd +++p E+ +l+ ++ G + Y+ +iq+ + +aPa++ d hk08207 265 IekPRHIEVQILG----DQYGNiLHLYERDCSIQRRHQKVVEIAPAAHLD 310 aqqaqAaeiak.riadeLgg..vGvfaVElFvtaedGdellvNElAPRPH +q++++ ++a+ g++++G +VE+ v G+ hk08207 311 PQLRTRLTSDSvKLAKQVGYenAG--TVEFLVD-RHGK------------ 345 NSGHwTLdga<-* H+ ++ hk08207 346 ---HYFIEVN 352 PF02786.7.fs: domain 1 of 1, from 177 to 394: score 351.8, E = 1e-102 *->DkvsfkaamkeagvptvpstagPlvetleeAlaaAkeiGYPViIkAA Dkv+++a++ +agvp+vp+t++ ++ +l eA ++ +++G+P+i kAA hk08207 177 DKVEARAIAIAAGVPVVPGTDA-PITSLHEAHEFSNTYGFPIIFKAA 222 fglGGkGmriarneeelaelfasAlaeApaAFGndqvLvEKsLkgpKeIE +g+GG+Gmr++++ eel+e +++A +eA aAFGn+ ++vEK++++p++IE hk08207 223 YGGGGRGMRVVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIE 272 yeVlrDahGNcItvcnrEcsdqrGirtqksievAPSqtLtdeerqmlrea +++l+D++GN+ ++ +r+cs+qr r+qk++e AP+ L++++r +l ++ hk08207 273 VQILGDQYGNILHLYERDCSIQR--RHQKVVEIAPAAHLDPQLRTRLTSD 320 AvkiarelGyvGagtveFlldpdsgeyyfIEvNtRlsvesalaekaTGyd +vk+a+ +Gy++agtveFl+d+ g +yfIEvN Rl+ve++++e++T +d hk08207 321 SVKLAKQVGYENAGTVEFLVDR-HGKHYFIEVNSRLQVEHTVTEEITDVD 369 LakeaaKIAlGetLpelkNpvTgkTtAcFEPSLDYvVvKIPrwdl<-* L+ +++ +A G +Lp l++ ++ ++ hk08207 370 LVHAQIHVAEGRSLPDLGLR--------------------QENIR 394 PF02786.7.ls: domain 1 of 1, from 177 to 394: score 353.7, E = 2.8e-103 *->DkvsfkaamkeagvptvpstagPlvetleeAlaaAkeiGYPViIkAA Dkv+++a++ +agvp+vp+t++ ++ +l eA ++ +++G+P+i kAA hk08207 177 DKVEARAIAIAAGVPVVPGTDA-PITSLHEAHEFSNTYGFPIIFKAA 222 fglGGkGmriarneeelaelfasAlaeApaAFGndqvLvEKsLkgpKeIE +g+GG+Gmr++++ eel+e +++A +eA aAFGn+ ++vEK++++p++IE hk08207 223 YGGGGRGMRVVHSYEELEENYTRAYSEALAAFGNGALFVEKFIEKPRHIE 272 yeVlrDahGNcItvcnrEcsdqrGirtqksievAPSqtLtdeerqmlrea +++l+D++GN+ ++ +r+cs+qr r+qk++e AP+ L++++r +l ++ hk08207 273 VQILGDQYGNILHLYERDCSIQR--RHQKVVEIAPAAHLDPQLRTRLTSD 320 AvkiarelGyvGagtveFlldpdsgeyyfIEvNtRlsvesalaekaTGyd +vk+a+ +Gy++agtveFl+d+ g +yfIEvN Rl+ve++++e++T +d hk08207 321 SVKLAKQVGYENAGTVEFLVDR-HGKHYFIEVNSRLQVEHTVTEEITDVD 369 LakeaaKIAlGetLpelkNpvTgkTtAcFEPSLDYvVvKIPrwdl<-* L+ +++ +A G +Lp l++ ++ ++ hk08207 370 LVHAQIHVAEGRSLPDLGLR--------------------QENIR 394 PF02785.9.ls: domain 1 of 1, from 401 to 508: score 213.7, E = 3.8e-61 *->EcRInAEDPakgFflPspGritayrsPeeragGpGVRvDsggvyaGy +cR+++EDPa+ F +P++Gri+++rs G+G+R+D +++++G+ hk08207 401 QCRVTTEDPARSF-QPDTGRIEVFRSG----EGMGIRLDNASAFQGA 442 eIspyYDSmiaKlivwGedReeAiarMkrALkEfrIrGevkTNIpFLial +Isp+YDS+++K+i++G+d+++A+ +M rAL+Efr+rG vkTNI FL+++ hk08207 443 VISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRG-VKTNIAFLQNV 491 LedpdFlsGneGaFvtTkfld<-* L++ Fl+G v+T+f+d hk08207 492 LNNQQFLAGT----VDTQFID 508 PF02785.9.fs: domain 1 of 1, from 401 to 508: score 211.8, E = 6.4e-64 *->EcRInAEDPakgFflPspGritayrsPeeragGpGVRvDsggvyaGy +cR+++EDPa+ F +P++Gri+++rs G+G+R+D +++++G+ hk08207 401 QCRVTTEDPARSF-QPDTGRIEVFRSG----EGMGIRLDNASAFQGA 442 eIspyYDSmiaKlivwGedReeAiarMkrALkEfrIrGevkTNIpFLial +Isp+YDS+++K+i++G+d+++A+ +M rAL+Efr+rG vkTNI FL+++ hk08207 443 VISPHYDSLLVKVIAHGKDHPTAATKMSRALAEFRVRG-VKTNIAFLQNV 491 LedpdFlsGneGaFvtTkfld<-* L++ Fl+G v+T+f+d hk08207 492 LNNQQFLAGT----VDTQFID 508 PF00682.9.ls: domain 1 of 1, from 597 to 870: score 68.9, E = 1.5e-17 *->RDGeQalFgvafsveeKlaIA..........raLdeaGvdeIEvGHG RD++Q+l ++++++ + ++IA+ ++ ++ + +++G ++++v hk08207 597 RDAHQSLLATRVRTHDLKKIApyvahnfsklFSMENWGGATFDVA-- 641 dGLqGsSfNfPfmsetdfesvraiaevlkki......rgakilalcrprd +f e ++ ++++ e++++i+ + rga+ +++ + d hk08207 642 ---------MRFLYECPWRRLQELRELIPNIpfqmllRGANAVGYTNYPD 682 kdidaAveAakgaGvdrvhvfiatSdlhlkyKLrkdreevldraeeavky ++ ++ e ak +G+d+++vf+ + + + L++ e+++ a +v++ hk08207 683 NVVFKFCEVAKENGMDVFRVFDSLNY-LPNMLLGM---EAAGSAGGVVEA 728 ArsagddVrgyvstWyelGcEDasrtdlaflleivevaiaaklmesyGat A s++ dV + + ++ +l++ ++e+++ a G hk08207 729 AISYTGDVAD----------PSRTKYSLQYYMGLAEELVRA------GTH 762 riniaDTVGyltPneaaelisalkdrvpnidkviievHcHnDlGmAvANs ++ i+D+ G+l P + +l+s l+dr p +++++H H++ G +vA+ hk08207 763 ILCIKDMAGLLKPTACTMLVSSLRDRFPD---LPLHIHTHDTSGAGVAAM 809 laAveAGAdrvdgtvnGlGGCPYAQERAGNaaLWEelvaalkvlgdfynv la ++AGAd+vd++ +++ + + ++ +lva ++++ hk08207 810 LACAQAGADVVDVAADSMS------GMTSQPSM-GALVACTRGTP----L 848 dTgldlsklrdiaqlVarasgr<-* dT + d +++ + a+g+ hk08207 849 DTEVPMERVFDYSEYWEGARGL 870 PF00682.9.fs: domain 1 of 1, from 597 to 823: score 73.3, E = 1e-19 *->RDGeQalFgvafsveeKlaIA..........raLdeaGvdeIEvGHG RD++Q+l ++++++ + ++IA+ ++ ++ + +++G ++++v hk08207 597 RDAHQSLLATRVRTHDLKKIApyvahnfsklFSMENWGGATFDVA-- 641 dGLqGsSfNfPfmsetdfesvraiaevlkki......rgakilalcrprd +f e ++ ++++ e++++i+ + rga+ +++ + d hk08207 642 ---------MRFLYECPWRRLQELRELIPNIpfqmllRGANAVGYTNYPD 682 kdidaAveAakgaGvdrvhvfiatSdlhlkyKLrkdreevldraeeavky ++ ++ e ak +G+d+++vf+ + + + L++ e+++ a +v++ hk08207 683 NVVFKFCEVAKENGMDVFRVFDSLNY-LPNMLLGM---EAAGSAGGVVEA 728 ArsagddVrgyvstWyelGcEDasrtdlaflleivevaiaaklmesyGat A s++ dV + + ++ +l++ ++e+++ a G hk08207 729 AISYTGDVAD----------PSRTKYSLQYYMGLAEELVRA------GTH 762 riniaDTVGyltPneaaelisalkdrvpnidkviievHcHnDlGmAvANs ++ i+D+ G+l P + +l+s l+dr p +++++H H++ G +vA+ hk08207 763 ILCIKDMAGLLKPTACTMLVSSLRDRFPD---LPLHIHTHDTSGAGVAAM 809 laAveAGAdrvdgt<-* la ++AGAd+vd++ hk08207 810 LACAQAGADVVDVA 823 PF02436.8.fs: domain 1 of 1, from 887 to 1095: score 428.9, E = 6.6e-126 *->VYvHeIPGGQLSNLefQAkelGLgDkfeEVleeyprVnkdLGdipKV VY++eIPGGQ++NL+fQA+++GLg kf+EV+++y ++n++LGd++KV hk08207 887 VYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKV 933 TPTSKIVGdlAvfnVlnGltaaDvverAryldfPkSVvdflkGlyGrPPg TP+SKIVGdlA+f+V+nGl++a+++++A++l+fP+SVv+fl+G++G P+g hk08207 934 TPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHG 983 gfpEpLrkkvLkgekrpitcRPadlLePeadldkikkeleekggrevtee gfpEp+r+kvLk+ +++++RP+++L+P +dl+++ kel +++g+evt e hk08207 984 GFPEPFRSKVLKD-LPRVEGRPGASLPP-LDLQALEKELVDRHGEEVTPE 1031 DVLsYaLFPkVaeeFlefre.yGdlsvlPtreflyglaigeEgeaGAApt DVLs+a++P V+ +F+ f +++G+l+ l+tr fl+g++i+eE hk08207 1032 DVLSAAMYPDVFAHFKDFTAtFGPLDSLNTRLFLQGPKIAEE-------- 1073 efeVeiEggekTLiiklvavselp<-* feVe+E+g kTL+ik +avs+l+ hk08207 1074 -FEVELERG-KTLHIKALAVSDLN 1095 PF02436.8.ls: domain 1 of 1, from 887 to 1095: score 430.8, E = 1.7e-126 *->VYvHeIPGGQLSNLefQAkelGLgDkfeEVleeyprVnkdLGdipKV VY++eIPGGQ++NL+fQA+++GLg kf+EV+++y ++n++LGd++KV hk08207 887 VYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKV 933 TPTSKIVGdlAvfnVlnGltaaDvverAryldfPkSVvdflkGlyGrPPg TP+SKIVGdlA+f+V+nGl++a+++++A++l+fP+SVv+fl+G++G P+g hk08207 934 TPSSKIVGDLAQFMVQNGLSRAEAEAQAEELSFPRSVVEFLQGYIGVPHG 983 gfpEpLrkkvLkgekrpitcRPadlLePeadldkikkeleekggrevtee gfpEp+r+kvLk+ +++++RP+++L+P +dl+++ kel +++g+evt e hk08207 984 GFPEPFRSKVLKD-LPRVEGRPGASLPP-LDLQALEKELVDRHGEEVTPE 1031 DVLsYaLFPkVaeeFlefre.yGdlsvlPtreflyglaigeEgeaGAApt DVLs+a++P V+ +F+ f +++G+l+ l+tr fl+g++i+eE hk08207 1032 DVLSAAMYPDVFAHFKDFTAtFGPLDSLNTRLFLQGPKIAEE-------- 1073 efeVeiEggekTLiiklvavselp<-* feVe+E+g kTL+ik +avs+l+ hk08207 1074 -FEVELERG-KTLHIKALAVSDLN 1095 PF00364.12.ls: domain 1 of 1, from 1136 to 1203: score 94.3, E = 3.3e-25 *->keiksPmiGesvkegtvvevlVkvGDkVkaGqvlcevEaMKmemeip +i++Pm+G+++ ++V +G kV++Gq+lc+++aMKme++++ hk08207 1136 GQIGAPMPGKVID------IKVVAGAKVAKGQPLCVLSAMKMETVVT 1176 ApvaGvvkeilvkeGdtVevGdpLaki<-* +p+ G+v++++v ++t+e++d++++i hk08207 1177 SPMEGTVRKVHVTKDMTLEGDDLILEI 1203 PF00364.12.fs: domain 1 of 1, from 1136 to 1203: score 92.4, E = 7.1e-25 *->keiksPmiGesvkegtvvevlVkvGDkVkaGqvlcevEaMKmemeip +i++Pm+G+++ ++V +G kV++Gq+lc+++aMKme++++ hk08207 1136 GQIGAPMPGKVID------IKVVAGAKVAKGQPLCVLSAMKMETVVT 1176 ApvaGvvkeilvkeGdtVevGdpLaki<-* +p+ G+v++++v ++t+e++d++++i hk08207 1177 SPMEGTVRKVHVTKDMTLEGDDLILEI 1203 //