hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-17042356/chunk_1/iprscan-20090618-17042356.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk08893 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02828.7.ls L27 domain 123.0 7.7e-34 2 PF00625.11.ls Guanylate kinase 120.4 4.7e-33 1 PF00625.11.fs Guanylate kinase 120.2 5.6e-33 1 PF02828.7.fs L27 domain 119.0 6.1e-33 2 PF07653.7.fs Variant SH3 domain 51.3 4e-14 1 PF07653.7.ls Variant SH3 domain 53.1 8.5e-13 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 29.2 1.5e-07 1 PF00018.18.fs SH3 domain 26.7 1.6e-06 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 31.1 3.6e-06 1 PF00018.18.ls SH3 domain 17.2 0.0003 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02828.7.ls 1/2 20 75 .. 1 56 [] 53.1 8.5e-13 PF02828.7.fs 1/2 20 75 .. 1 56 [] 51.1 1.1e-13 PF02828.7.fs 2/2 76 130 .. 1 56 [] 67.9 1.9e-18 PF02828.7.ls 2/2 76 130 .. 1 56 [] 69.9 7.5e-18 PF00595.14.ls 1/1 149 225 .. 1 86 [] 31.1 3.6e-06 PF00595.14.fs 1/1 149 225 .. 1 86 [] 29.2 1.5e-07 PF00018.18.ls 1/1 237 300 .. 1 59 [] 17.2 0.0003 PF07653.7.ls 1/1 238 300 .. 1 69 [] 53.1 8.5e-13 PF07653.7.fs 1/1 238 300 .. 1 69 [] 51.3 4e-14 PF00018.18.fs 1/1 260 300 .. 17 59 .] 26.7 1.6e-06 PF00625.11.ls 1/1 395 495 .. 1 107 [] 120.4 4.7e-33 PF00625.11.fs 1/1 396 485 .. 1 93 [. 120.2 5.6e-33 Alignments of top-scoring domains: PF02828.7.ls: domain 1 of 2, from 20 to 75: score 53.1, E = 8.5e-13 *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae a+q++l++L +L+s ++a e dl++Lr+i++sp+++sL ++H++++e hk08893 20 AMQQVLDNLGSLPSATGAAELDLIFLRGIMESPIVRSLAKAHERLEE 66 kvydppspe<-* ++ ++++++ hk08893 67 TKLEAVRDN 75 PF02828.7.fs: domain 1 of 2, from 20 to 75: score 51.1, E = 1.1e-13 *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae a+q++l++L +L+s ++a e dl++Lr+i++sp+++sL ++H++++e hk08893 20 AMQQVLDNLGSLPSATGAAELDLIFLRGIMESPIVRSLAKAHERLEE 66 kvydppspe<-* ++ ++++++ hk08893 67 TKLEAVRDN 75 PF02828.7.fs: domain 2 of 2, from 76 to 130: score 67.9, E = 1.9e-18 *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae ++++++e+L +L +l e+s + +aeL +iLq+ph+qsLle+HD va+ hk08893 76 NLELVQEILRDLAQLAEQS-STAAELAHILQEPHFQSLLETHDSVAS 121 kvydppspe<-* k+y++p+p+ hk08893 122 KTYETPPPS 130 PF02828.7.ls: domain 2 of 2, from 76 to 130: score 69.9, E = 7.5e-18 *->avqralelLeeLqslleaseedlaeLrkiLqsphlqsLlevHDkvae ++++++e+L +L +l e+s + +aeL +iLq+ph+qsLle+HD va+ hk08893 76 NLELVQEILRDLAQLAEQS-STAAELAHILQEPHFQSLLETHDSVAS 121 kvydppspe<-* k+y++p+p+ hk08893 122 KTYETPPPS 130 PF00595.14.ls: domain 1 of 1, from 149 to 225: score 31.1, E = 3.6e-06 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v + k ++ lG++ +++++ +++++++l+G g+ +++G L hk08893 149 MVGIRKT-AGEHLGVTFRVEGG-----ELVIARILHG-GMVAQQGLL 188 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+I +vNGq++ + +++l++++g +v L++l hk08893 189 HVGDIIKEVNGQPVGSD-PRALQELLRNASG-SVILKIL 225 PF00595.14.fs: domain 1 of 1, from 149 to 225: score 29.2, E = 1.5e-07 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v + k ++ lG++ +++++ +++++++l+G g+ +++G L hk08893 149 MVGIRKT-AGEHLGVTFRVEGG-----ELVIARILHG-GMVAQQGLL 188 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+I +vNGq++ + +++l++++g +v L++l hk08893 189 HVGDIIKEVNGQPVGSD-PRALQELLRNASG-SVILKIL 225 PF00018.18.ls: domain 1 of 1, from 237 to 300: score 17.2, E = 0.0003 *->kkvvALYDYeare.......sdELsFkkGDvitvleksddpgWWkgr +v+ +DY++ ++ + ++ L F GD +++++++d+ +WW + hk08893 237 VFVKCHFDYDPARdslipckEAGLRFNAGDLLQIVNQDDA-NWWQAC 282 lkgtgGkeGliPsNYVepv<-* +g GliPs+ +e++ hk08893 283 HVEGG-SAGLIPSQLLEEK 300 PF07653.7.ls: domain 1 of 1, from 238 to 300: score 53.1, E = 8.5e-13 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww ++++++dy++ ++ + ++ +e+ L++ +Gd++ + ++dd +ww hk08893 238 FVKCHFDYDP-ARDSLIPcKEAGLRFNAGDLLQIV----NQDDANWW 279 eg.eslggGrrrRGlvPssaveel<-* ++ + gG + Gl+Ps+++ee hk08893 280 QAcHV-EGGSA--GLIPSQLLEEK 300 PF07653.7.fs: domain 1 of 1, from 238 to 300: score 51.3, E = 4e-14 *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww ++++++dy++ ++ + ++ +e+ L++ +Gd++ + ++dd +ww hk08893 238 FVKCHFDYDP-ARDSLIPcKEAGLRFNAGDLLQIV----NQDDANWW 279 eg.eslggGrrrRGlvPssaveel<-* ++ + gG + Gl+Ps+++ee hk08893 280 QAcHV-EGGSA--GLIPSQLLEEK 300 PF00018.18.fs: domain 1 of 1, from 260 to 300: score 26.7, E = 1.6e-06 *->LsFkkGDvitvleksddpgWWkgrlkgtgGkeGliPsNYVepv<-* L F GD +++++++d+ +WW + +g GliPs+ +e++ hk08893 260 LRFNAGDLLQIVNQDDA-NWWQACHVEGG-SAGLIPSQLLEEK 300 PF00625.11.ls: domain 1 of 1, from 395 to 495: score 120.4, E = 4.7e-33 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk R P +E++G Y FVs r eme+d a+ +LE++e++GN+YGT hk08893 395 SRRPKDSEREGQGYSFVS-RGEMEADVRAGRYLEHGEYEGNLYGTRI 440 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL ++r v + Gk c+LDv+pQ+vk+lrtae+ P++vFI +p+ + L hk08893 441 DSIRGVVAAGKVCVLDVNPQAVKVLRTAEFV-PYVVFIEAPD----FETL 485 rgrnketEEs<-* r n+ + Es hk08893 486 RAMNRAALES 495 PF00625.11.fs: domain 1 of 1, from 396 to 485: score 120.2, E = 5.6e-33 *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk R P +E++G Y FVs r eme+d a+ +LE++e++GN+YGT hk08893 396 -RRPKDSEREGQGYSFVS-RGEMEADVRAGRYLEHGEYEGNLYGTRI 440 eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqel<-* ++r v + Gk c+LDv+pQ+vk+lrtae+ P++vFI +p+ ++l hk08893 441 DSIRGVVAAGKVCVLDVNPQAVKVLRTAEFV-PYVVFIEAPDFETL 485 //