hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17042356/chunk_1/iprscan-20090618-17042356.nocrc
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Query sequence: hk08893
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00072                                                 278.2    6.2e-79   1
SM00569                                                 114.8    9.8e-30   2
SM00228                                                  50.8    1.7e-10   1
SM00326                                                  49.9    3.3e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00569    1/2      20    75 ..     1    62 []    55.6  6.6e-12
SM00569    2/2      76   130 ..     1    62 []    59.2  5.2e-13
SM00228    1/1     158   228 ..     1    80 []    50.8  1.7e-10
SM00326    1/1     237   301 ..     1    58 []    49.9  3.3e-10
SM00072    1/1     358   549 ..     1   203 []   278.2  6.2e-79

Alignments of top-scoring domains:
SM00569: domain 1 of 2, from 20 to 75: score 55.6, E = 6.6e-12
                   *->avqlllevLeeLqsllepkedrqedlqeLrrlLqsmFsphlqaLlki
                      a+q++l++L +L+s +++ e    dl++Lr++++s   p +++L k+
     hk08893    20    AMQQVLDNLGSLPSATGAAE---LDLIFLRGIMES---PIVRSLAKA 60   

                   HDkvaeteydpplpp<-*
                   H++++et++++++++   
     hk08893    61 HERLEETKLEAVRDN    75   

SM00569: domain 2 of 2, from 76 to 130: score 59.2, E = 5.2e-13
                   *->avqlllevLeeLqsllepkedrqedlqeLrrlLqsmFsphlqaLlki
                      +++l++e+L +L +l e++    + ++eL ++Lq+   ph+q+Ll++
     hk08893    76    NLELVQEILRDLAQLAEQS----STAAELAHILQE---PHFQSLLET 115  

                   HDkvaeteydpplpp<-*
                   HD+va + y+ p+p    
     hk08893   116 HDSVASKTYETPPPS    130  

SM00228: domain 1 of 1, from 158 to 228: score 50.8, E = 1.7e-10
                   *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG
                      + lG++ + +++ ++++++++G+  a+ G     lL+vGD+I eVNG
     hk08893   158    EHLGVTFRVeggELVIARILHGGMVAQQG-----LLHVGDIIKEVNG 199  

                   etsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    ++v g +    ++ll++a+g     +v L++l+     
     hk08893   200 -QPV-GSDPRALQELLRNASG-----SVILKILPSY    228  

SM00326: domain 1 of 1, from 237 to 301: score 49.9, E = 3.3e-10
                   *->eyvvAlYDyea.......qnedELsFkkGDiitvleksddgWweGel
                      ++v+  +Dy++ +++  ++ e  L F++GD +++++++d +Ww++ +
     hk08893   237    VFVKCHFDYDPardslipCKEAGLRFNAGDLLQIVNQDDANWWQACH 283  

                   nrtGkeGlfPsnYVeeie<-*
                      G  Gl+Ps  +ee++   
     hk08893   284 VEGGSAGLIPSQLLEEKR    301  

SM00072: domain 1 of 1, from 358 to 549: score 278.2, E = 6.2e-79
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      +r+++vL+G++GvG+++lk+kL++++Pd  ++g++V++T+R p+ +E
     hk08893   358    RRKTLVLIGAQGVGRRSLKNKLIMWDPD--RYGTTVPYTSRRPKDSE 402  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae
                   ++G  + Y+Fvs + e+e d+++g +lE+gey+gn +YGT+++s+r v +
     hk08893   403 REG--QGYSFVS-RGEMEADVRAGRYLEHGEYEGN-LYGTRIDSIRGVVA 448  

                   kGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrg...
                    GK+c+LD++pq+vk+l++a    e+ p+v+FI++P+ e l+ ++r+  +
     hk08893   449 AGKVCVLDVNPQAVKVLRTA----EFVPYVVFIEAPDFETLRAMNRAale 494  

                   ....aeqRgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddleda
                   ++ +++q ++ +++r+ +++ + +q+ +++y      Fdl++vn++le++
     hk08893   495 sgisTKQLTEADLRRTVEESSR-IQRGYGHY------FDLCLVNSNLERT 537  

                   yYkeLkeileaeq<-*
                   + +eL++++e+++   
     hk08893   538 F-RELQTAMEKLR    549  

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