hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-17372225/chunk_1/iprscan-20090525-17372225.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk09638 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00010.16.ls Helix-loop-helix DNA-binding domain 71.5 2.6e-18 1 PF00010.16.fs Helix-loop-helix DNA-binding domain 69.5 5e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00010.16.fs 1/1 406 456 .. 1 53 [] 69.5 5e-18 PF00010.16.ls 1/1 406 456 .. 1 53 [] 71.5 2.6e-18 Alignments of top-scoring domains: PF00010.16.fs: domain 1 of 1, from 406 to 456: score 69.5, E = 5e-18 *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve +R+ahna+E+r+R +iNd++ eL++l+ Kl+K ++Lr+A++ hk09638 406 KRTAHNAIEKRYRSSINDKIIELKDLVVG-T-EAKLNKSAVLRKAID 450 YIksLq<-* YI++Lq hk09638 451 YIRFLQ 456 PF00010.16.ls: domain 1 of 1, from 406 to 456: score 71.5, E = 2.6e-18 *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve +R+ahna+E+r+R +iNd++ eL++l+ Kl+K ++Lr+A++ hk09638 406 KRTAHNAIEKRYRSSINDKIIELKDLVVG-T-EAKLNKSAVLRKAID 450 YIksLq<-* YI++Lq hk09638 451 YIRFLQ 456 //