hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-02321489/chunk_1/iprscan-20080813-02321489.nocrc
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Query sequence: hk09858
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF02750.5.ls Synapsin, ATP binding domain                 561.9     6e-166   1
PF02750.5.fs Synapsin, ATP binding domain                 559.9   2.3e-165   1
PF02078.7.fs Synapsin, N-terminal domain                  256.8    6.1e-77   1
PF02078.7.ls Synapsin, N-terminal domain                  258.8    1.1e-74   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF02078.7.fs   1/1     144   248 ..     1   105 []   256.8  6.1e-77
PF02078.7.ls   1/1     144   248 ..     1   105 []   258.8  1.1e-74
PF02750.5.fs   1/1     250   452 ..     1   203 []   559.9 2.3e-165
PF02750.5.ls   1/1     250   452 ..     1   203 []   561.9   6e-166

Alignments of top-scoring domains:
PF02078.7.fs: domain 1 of 1, from 144 to 248: score 256.8, E = 6.1e-77
                   *->vakrkakvLLviDdpHtDWsKyFrGKKvlGdidikvEqaEFselnLv
                      +a+rkakvLLv+D+pH+DW+K+FrGKKvlGd+dikvEqaEFselnLv
     hk09858   144    AAARKAKVLLVVDEPHADWAKCFRGKKVLGDYDIKVEQAEFSELNLV 190  

                   AyadggtmvDmqvlRnGtkvvRsfkPDFvLvRqHafsmaeneDyRsLviG
                   A+adg+++vDmqvlRnGtkvvRsf+PDFvL+RqHaf+maeneD+R+L+iG
     hk09858   191 AHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLIIG 240  

                   lqYaGlPs<-*
                   +qYaGlPs   
     hk09858   241 MQYAGLPS    248  

PF02078.7.ls: domain 1 of 1, from 144 to 248: score 258.8, E = 1.1e-74
                   *->vakrkakvLLviDdpHtDWsKyFrGKKvlGdidikvEqaEFselnLv
                      +a+rkakvLLv+D+pH+DW+K+FrGKKvlGd+dikvEqaEFselnLv
     hk09858   144    AAARKAKVLLVVDEPHADWAKCFRGKKVLGDYDIKVEQAEFSELNLV 190  

                   AyadggtmvDmqvlRnGtkvvRsfkPDFvLvRqHafsmaeneDyRsLviG
                   A+adg+++vDmqvlRnGtkvvRsf+PDFvL+RqHaf+maeneD+R+L+iG
     hk09858   191 AHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLIIG 240  

                   lqYaGlPs<-*
                   +qYaGlPs   
     hk09858   241 MQYAGLPS    248  

PF02750.5.fs: domain 1 of 1, from 250 to 452: score 559.9, E = 2.3e-165
                   *->nslhsvYnFcdKPWvfaqlvkifkklGaEkFPLieqtyyPnHKemLt
                      nsl+s+YnFcdKPWvfaqlv+i+k+lG+EkFPLieqtyyPnHKemLt
     hk09858   250    NSLESIYNFCDKPWVFAQLVAIYKTLGGEKFPLIEQTYYPNHKEMLT 296  

                   apkfPvvvKlGHAHsGmGKvKvdnqhdfqDiasvvAltktYAtaEpfiDs
                   +p+fPvvvK+GHAHsGmGKvKv+n++dfqDiasvvAlt+tYAtaEpfiDs
     hk09858   297 LPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDS 346  

                   KyDirvqKiGnnYKAylRtsisGnWKantGsAmLEqiamserYkLWvDtC
                   KyDirvqKiGnnYKAy+RtsisGnWK+ntGsAmLEqiams+rYkLWvDtC
     hk09858   347 KYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDTC 396  

                   selFGGLDicAvkAlhgKdGrdyiiEvvdssmpLiGehqeEDkqLiaelv
                   se+FGGLDicAvkA+hgKdG+dyi+Ev+d+smpLiGehq+ED+qLi+elv
     hk09858   397 SEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITELV 446  

                   vsKmsq<-*
                   +sKm+q   
     hk09858   447 ISKMNQ    452  

PF02750.5.ls: domain 1 of 1, from 250 to 452: score 561.9, E = 6e-166
                   *->nslhsvYnFcdKPWvfaqlvkifkklGaEkFPLieqtyyPnHKemLt
                      nsl+s+YnFcdKPWvfaqlv+i+k+lG+EkFPLieqtyyPnHKemLt
     hk09858   250    NSLESIYNFCDKPWVFAQLVAIYKTLGGEKFPLIEQTYYPNHKEMLT 296  

                   apkfPvvvKlGHAHsGmGKvKvdnqhdfqDiasvvAltktYAtaEpfiDs
                   +p+fPvvvK+GHAHsGmGKvKv+n++dfqDiasvvAlt+tYAtaEpfiDs
     hk09858   297 LPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPFIDS 346  

                   KyDirvqKiGnnYKAylRtsisGnWKantGsAmLEqiamserYkLWvDtC
                   KyDirvqKiGnnYKAy+RtsisGnWK+ntGsAmLEqiams+rYkLWvDtC
     hk09858   347 KYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMSDRYKLWVDTC 396  

                   selFGGLDicAvkAlhgKdGrdyiiEvvdssmpLiGehqeEDkqLiaelv
                   se+FGGLDicAvkA+hgKdG+dyi+Ev+d+smpLiGehq+ED+qLi+elv
     hk09858   397 SEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITELV 446  

                   vsKmsq<-*
                   +sKm+q   
     hk09858   447 ISKMNQ    452  

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