hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-02445334/chunk_1/iprscan-20080813-02445334.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk09982 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03215.6.ls Rad17 cell cycle checkpoint protein 1192.0 0 1 PF03215.6.fs Rad17 cell cycle checkpoint protein 1190.1 0 1 PF00004.19.fs ATPase family associated with various cellul 23.6 5.9e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03215.6.fs 1/1 82 592 .. 1 651 [] 1190.1 0 PF03215.6.ls 1/1 82 592 .. 1 651 [] 1192.0 0 Alignments of top-scoring domains: PF03215.6.fs: domain 1 of 1, from 82 to 592: score 1190.1, E = 0 *->lkedenelWveKykPekreeLAvHKkKIkeVeeWLkaqfLEsakkrG ++++ene+Wv+KykPe+++eLAvHKkKI+eVe+WLkaq+LE+++k+G hk09982 82 EYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQG 128 GsiLLltGPsGCGKSTtvkvLsKElgikliEwlNPvsLkepdfEhqksDF GsiLL+tGP+GCGK+Tt+k+LsKE+gi+++Ew+NPv+ pdf qk+DF hk09982 129 GSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVL---PDF--QKDDF 173 kgltevesrFHmFPYlsqiesfkEFlLrdarylklqkrGkdlrtkKklIL kg++++es+FHmFPY+sqi++fkEFlLr+++y+klq++G+dlrt+Kk+IL hk09982 174 KGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIIL 223 vedLPHLnqFysDaRekFrevlrkvLrssealLPPlIfclTEiqLnsleg vedLP nqFy+D+ ++++evlrk++r++++ PlIf+++ +sl+g hk09982 224 VEDLP--NQFYRDS-HTLHEVLRKYVRIGRC---PLIFIIS----DSLSG 263 dNLNqdrFGiDysFsavtlfnKeileeprikrikFNPvApTlMKKaLkrI dN Nq++ lf+Kei+ee++i++i+FNPvApT+M+K+L+rI hk09982 264 DN-NQRL-----------LFPKEIQEECSISNISFNPVAPTIMMKFLNRI 301 vvkeakklkgklksPkkqsvlelIcqeaeGDlRSAINsLQfsssqsFEKK v++ea+k++gk+++P+k+s lel+cq+++GD+RSAINsLQfsss K hk09982 302 VTIEANKNGGKITVPDKTS-LELLCQGCSGDIRSAINSLQFSSS-----K 345 GennlRevksGKGKGnDfSLkadaVLEslSKSkREeYARFKnYKkadivk GennlR++k+G +SLk+daVL SKSkR++ k+d+v+ hk09982 346 GENNLRPRKKG------MSLKSDAVL---SKSKRRK--------KPDRVF 378 edkevnaifkKDVsLslFHAIGKvlyaKResddElLKAssqqtGdserip e++ev+ai++KDVsL+lF+A+GK+ly+KR+s++El ds+r+p hk09982 379 ENQEVQAIGGKDVSLFLFRALGKILYCKRASLTEL---------DSPRLP 419 kvkvskkrrrKsaisLkeleReeLLnvDqCFtsKRRsLvepeeviemSsl + +L+e+eR++L Lvepeev+emS++ hk09982 420 S-------------HLSEYERDTL-------------LVEPEEVVEMSHM 443 sgekFklgLfeNYvdFcKGEveIddavsvadlLSicDiLsGDwetreyll +g++F+l+L++NY+dF+ +eIdd+v+++++LS++DiLsGDw+tr +ll hk09982 444 PGDLFNLYLHQNYIDFF---MEIDDIVRASEFLSFADILSGDWNTR-SLL 489 rEystsfatrsvmgsNkkevyaprewkvrklrnlfKvQaEDWLNVSLYKY rEysts+atr+vm+sNk+++ya+++++++++r+l+K+Q+ hk09982 490 REYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQW----------- 528 NAVHSFRNitLEFavykplrekcesykakyilFYLpaLPslesqrlptld F+++k++re+c+++ka++++F+LpaL +l++q+lp+l+ hk09982 529 ------------FLINKKYRENCLAAKALFPDFCLPAL-CLQTQLLPYLA 565 klsiimkveaqIdviddIidPieilsvedGllPlmDNDSNNCDHLEDqKK +l+i+m+++aqI++i+dI G+lPl hk09982 566 LLTIPMRNQAQISFIQDI-----------GRLPL---------------- 588 eRkw<-* +R++ hk09982 589 KRHF 592 PF03215.6.ls: domain 1 of 1, from 82 to 592: score 1192.0, E = 0 *->lkedenelWveKykPekreeLAvHKkKIkeVeeWLkaqfLEsakkrG ++++ene+Wv+KykPe+++eLAvHKkKI+eVe+WLkaq+LE+++k+G hk09982 82 EYLSENEPWVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQG 128 GsiLLltGPsGCGKSTtvkvLsKElgikliEwlNPvsLkepdfEhqksDF GsiLL+tGP+GCGK+Tt+k+LsKE+gi+++Ew+NPv+ pdf qk+DF hk09982 129 GSILLITGPPGCGKTTTLKILSKEHGIQVQEWINPVL---PDF--QKDDF 173 kgltevesrFHmFPYlsqiesfkEFlLrdarylklqkrGkdlrtkKklIL kg++++es+FHmFPY+sqi++fkEFlLr+++y+klq++G+dlrt+Kk+IL hk09982 174 KGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKLQMLGDDLRTDKKIIL 223 vedLPHLnqFysDaRekFrevlrkvLrssealLPPlIfclTEiqLnsleg vedLP nqFy+D+ ++++evlrk++r++++ PlIf+++ +sl+g hk09982 224 VEDLP--NQFYRDS-HTLHEVLRKYVRIGRC---PLIFIIS----DSLSG 263 dNLNqdrFGiDysFsavtlfnKeileeprikrikFNPvApTlMKKaLkrI dN Nq++ lf+Kei+ee++i++i+FNPvApT+M+K+L+rI hk09982 264 DN-NQRL-----------LFPKEIQEECSISNISFNPVAPTIMMKFLNRI 301 vvkeakklkgklksPkkqsvlelIcqeaeGDlRSAINsLQfsssqsFEKK v++ea+k++gk+++P+k+s lel+cq+++GD+RSAINsLQfsss K hk09982 302 VTIEANKNGGKITVPDKTS-LELLCQGCSGDIRSAINSLQFSSS-----K 345 GennlRevksGKGKGnDfSLkadaVLEslSKSkREeYARFKnYKkadivk GennlR++k+G +SLk+daVL SKSkR++ k+d+v+ hk09982 346 GENNLRPRKKG------MSLKSDAVL---SKSKRRK--------KPDRVF 378 edkevnaifkKDVsLslFHAIGKvlyaKResddElLKAssqqtGdserip e++ev+ai++KDVsL+lF+A+GK+ly+KR+s++El ds+r+p hk09982 379 ENQEVQAIGGKDVSLFLFRALGKILYCKRASLTEL---------DSPRLP 419 kvkvskkrrrKsaisLkeleReeLLnvDqCFtsKRRsLvepeeviemSsl + +L+e+eR++L Lvepeev+emS++ hk09982 420 S-------------HLSEYERDTL-------------LVEPEEVVEMSHM 443 sgekFklgLfeNYvdFcKGEveIddavsvadlLSicDiLsGDwetreyll +g++F+l+L++NY+dF+ +eIdd+v+++++LS++DiLsGDw+tr +ll hk09982 444 PGDLFNLYLHQNYIDFF---MEIDDIVRASEFLSFADILSGDWNTR-SLL 489 rEystsfatrsvmgsNkkevyaprewkvrklrnlfKvQaEDWLNVSLYKY rEysts+atr+vm+sNk+++ya+++++++++r+l+K+Q+ hk09982 490 REYSTSIATRGVMHSNKARGYAHCQGGGSSFRPLHKPQW----------- 528 NAVHSFRNitLEFavykplrekcesykakyilFYLpaLPslesqrlptld F+++k++re+c+++ka++++F+LpaL +l++q+lp+l+ hk09982 529 ------------FLINKKYRENCLAAKALFPDFCLPAL-CLQTQLLPYLA 565 klsiimkveaqIdviddIidPieilsvedGllPlmDNDSNNCDHLEDqKK +l+i+m+++aqI++i+dI G+lPl hk09982 566 LLTIPMRNQAQISFIQDI-----------GRLPL---------------- 588 eRkw<-* +R++ hk09982 589 KRHF 592 //