hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-02445334/chunk_1/iprscan-20080813-02445334.nocrc
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Query sequence: hk09982
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00602 rad24: checkpoint protein rad24               1463.6          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00602   1/1      12   651 ..     1   670 []  1463.6        0

Alignments of top-scoring domains:
TIGR00602: domain 1 of 1, from 12 to 651: score 1463.6, E = 0
                   *->mrvtdlvkeslddflkkskiskItkpSlssktSshRrknapstdESs
                      ++vtd+v++s+ddfl++s++s+It++Sl++++SshRrkn+pst+ESs
     hk09982    12    NQVTDWVDPSFDDFLECSGVSTITATSLGVNNSSHRRKNGPSTLESS 58   

                   RlharkrgaLSsleqdkglelsslkedrnelWveKYkPetqeeLAVHKkK
                   R++arkrg+LSsleq++gle+s++++++ne+Wv+KYkPetq+eLAVHKkK
     hk09982    59 RFPARKRGNLSSLEQIYGLENSKEYLSENEPWVDKYKPETQHELAVHKKK 108  

                   ieeVeewLkAqvLesakkrGGSiLLitGPsGCGKsTtikiLSKeLgikvq
                   ieeVe+wLkAqvLe+++k+GGSiLLitGP+GCGK+Tt+kiLSKe+gi+vq
     hk09982   109 IEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKILSKEHGIQVQ 158  

                   ewlNPvllkeqkndekdtlsleskfsrfPYlSqievFsEfllratKYnkl
                   ew+NPvl+++qk+d+k+++++es+f++fPY+Sqi+vF+EfllratKYnkl
     hk09982   159 EWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQIAVFKEFLLRATKYNKL 208  

                   QklGddlqtdkklILvedLPHLnkFyrdldRRalrevLrtkyvseGrlpP
                   Q+lGddl+tdkk+ILvedLP  n+Fyrd++  +l+evLr kyv++Gr+p 
     hk09982   209 QMLGDDLRTDKKIILVEDLP--NQFYRDSH--TLHEVLR-KYVRIGRCP- 252  

                   LviiiteselnnlegdNnqdkFGirllFpavtIMnkeileeprvsnikFN
                   L++ii++s    l+gdNnq     rllFp      kei+ee+++sni+FN
     hk09982   253 LIFIISDS----LSGDNNQ-----RLLFP------KEIQEECSISNISFN 287  

                   PiapTlmkKfLnrIvtkeakkkgeKilvpkktsvedlcqgesGDiRSAIn
                   P+apT+m+KfLnrIvt+ea+k+g+Ki+vp+kts+e+lcqg+sGDiRSAIn
     hk09982   288 PVAPTIMMKFLNRIVTIEANKNGGKITVPDKTSLELLCQGCSGDIRSAIN 337  

                   SLQfssSksENgslpkkkrkStksdaevskskikgkhssleenqviqalg
                   SLQfssSk+EN+++p+kk++S+ksda++sksk+++k+++++enq++qa+g
     hk09982   338 SLQFSSSKGENNLRPRKKGMSLKSDAVLSKSKRRKKPDRVFENQEVQAIG 387  

                   ekdvslflkralkkilYikradlneldssiprlpSflselsrdtlmvale
                   +kdvslfl+ral+kilY+kra+l+elds  prlpS+lse++rdtl+v++e
     hk09982   388 GKDVSLFLFRALGKILYCKRASLTELDS--PRLPSHLSEYERDTLLVEPE 435  

                   evvEmsrregdkvfklyskQnyndefvevdkvvkasefknfidiksgDwn
                   evvEms+++gd +f+ly++Qny+d+f+e+d++v+asef++f+di+sgDwn
     hk09982   436 EVVEMSHMPGD-LFNLYLHQNYIDFFMEIDDIVRASEFLSFADILSGDWN 484  

                   ersLlreysvssarrgvlesnYkArgiakcqGgkssFrllykkqyflisk
                   +rsLlreys+s+a+rgv++sn kArg+a+cqGg+ssFr+l+k+q+fli+k
     hk09982   485 TRSLLREYSTSIATRGVMHSN-KARGYAHCQGGGSSFRPLHKPQWFLINK 533  

                   kYrenclaakelfkVedlllvadCLqtqllaylaldtiamrndaqisfid
                   kYrenclaak+lf  +d++l+a+CLqtqll+ylal+ti+mrn+aqisfi+
     hk09982   534 KYRENCLAAKALF--PDFCLPALCLQTQLLPYLALLTIPMRNQAQISFIQ 581  

                   dlerlplkRkfrrlklealtdRevgmidddleDeevifgddpikeSvsdp
                   d++rlplkR+f+rlk+ealtdRe+gmid+d++De++++g+++++eS+++p
     hk09982   582 DIGRLPLKRHFGRLKMEALTDREHGMIDPDSGDEAQLNGGHSAEESLGEP 631  

                   sqaagnadpEtfsledsdnSlse<-*
                   +qa++   pEt+sl++s+nS+se   
     hk09982   632 TQATV---PETWSLPLSQNSASE    651  

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