hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-02500813/chunk_1/iprscan-20080813-02500813.nocrc
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Query sequence: hk10125
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF00060.17.ls Ligand-gated ion channel                   385.6   6.7e-113   1
PF00060.17.fs Ligand-gated ion channel                   383.8   2.3e-112   1
PF01094.18.fs Receptor family ligand binding region       28.5    1.3e-07   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF01094.18.fs   1/1      32   112 ..   324   421 .]    28.5  1.3e-07
PF00060.17.fs   1/1     313   588 ..     1   304 []   383.8 2.3e-112
PF00060.17.ls   1/1     313   588 ..     1   304 []   385.6 6.7e-113

Alignments of top-scoring domains:
PF01094.18.fs: domain 1 of 1, from 32 to 112: score 28.5, E = 1.3e-07
                   *->allaYDAVyllAhAlnealrddpngtaglcnacrdsrvddasnalgg
                      ++++ DAV ++A+A++e+l+++  + ++  + + +            
     hk10125    32    SAHISDAVGVVAQAVHELLEKENITDPPRGCVGNT------------ 66   

                   lnlglmkw.dGsqlleylrnkvnF.eGltGdvqfddnggrrpdyslviln
                        + w+ G+ + + l    ++ +G+tG+v f++ +g+r   ++ i+n
     hk10125    67 -----NIWkTGPLFKRVLMS-SKYaDGVTGRVEFNE-DGDRKFANYSIMN 109  

                   wdg<-*
                    ++   
     hk10125   110 LQN    112  

PF00060.17.fs: domain 1 of 1, from 313 to 588: score 383.8, E = 2.3e-112
                   *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp
                      ++++Wl +++++ +v+v+l+l++r fsP++++ ++          s+
     hk10125   313    QSTLWLLVGLSVHVVAVMLYLLDR-FSPFGRFKVN----------SE 348  

                   eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili
                   eee+   tls+++WFs+g+l++++ ++ +Prs+S+Ri+++vW+ Fa+i++
     hk10125   349 EEEEDALTLSSAMWFSWGVLLNsGIGEGAPRSFSARILGMVWAGFAMIIV 398  

                   sSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkes
                   +SYTANLAAFL+++r+++ I++++D++++np  +   + + +++++++++
     hk10125   399 ASYTANLAAFLVLDRPEERITGINDPRLRNPSDK---FIYATVKQSSVDI 445  

                   kiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmE
                   +   +rr +e  ++++++   + ++++s++e++q+Vr++   +l AF+++
     hk10125   446 Y---FRRQVELSTMYRHM---EKHNYESAAEAIQAVRDN---KLHAFIWD 486  

                   styleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAILeL
                   s++le+e++++  CdL+t Ge lf ++G+GI+++k+SP+++++sl+IL+ 
     hk10125   487 SAVLEFEASQK--CDLVTTGE-LFFRSGFGIGMRKDSPWKQNVSLSILKS 533  

                   sEsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLgiGlvL
                   +E+G++e+L++ W ++  +C+s s+  +++ L++en+aG+F+++++G+v 
     hk10125   534 HENGFMEDLDKTWVRYQ-ECDSRSN--APATLTFENMAGVFMLVAGGIVA 580  

                   allvalfE<-*
                   ++++ ++E   
     hk10125   581 GIFLIFIE    588  

PF00060.17.ls: domain 1 of 1, from 313 to 588: score 385.6, E = 6.7e-113
                   *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp
                      ++++Wl +++++ +v+v+l+l++r fsP++++ ++          s+
     hk10125   313    QSTLWLLVGLSVHVVAVMLYLLDR-FSPFGRFKVN----------SE 348  

                   eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili
                   eee+   tls+++WFs+g+l++++ ++ +Prs+S+Ri+++vW+ Fa+i++
     hk10125   349 EEEEDALTLSSAMWFSWGVLLNsGIGEGAPRSFSARILGMVWAGFAMIIV 398  

                   sSYTANLAAFLTvermqspIesleDLakqnpkieYGtlrggstftffkes
                   +SYTANLAAFL+++r+++ I++++D++++np  +   + + +++++++++
     hk10125   399 ASYTANLAAFLVLDRPEERITGINDPRLRNPSDK---FIYATVKQSSVDI 445  

                   kiptyrrmweymnsrkgrskaPsvfvksyeeGvqrVrngpenglyAFlmE
                   +   +rr +e  ++++++   + ++++s++e++q+Vr++   +l AF+++
     hk10125   446 Y---FRRQVELSTMYRHM---EKHNYESAAEAIQAVRDN---KLHAFIWD 486  

                   styleyevarnpdCdLttvGevlfgtkGYGIAlpkgSPlrdklslAILeL
                   s++le+e++++  CdL+t Ge lf ++G+GI+++k+SP+++++sl+IL+ 
     hk10125   487 SAVLEFEASQK--CDLVTTGE-LFFRSGFGIGMRKDSPWKQNVSLSILKS 533  

                   sEsGelekLenKWwkkkgkCpsestavsssqLglenfaGlFliLgiGlvL
                   +E+G++e+L++ W ++  +C+s s+  +++ L++en+aG+F+++++G+v 
     hk10125   534 HENGFMEDLDKTWVRYQ-ECDSRSN--APATLTFENMAGVFMLVAGGIVA 580  

                   allvalfE<-*
                   ++++ ++E   
     hk10125   581 GIFLIFIE    588  

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