hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-02500813/chunk_1/iprscan-20080813-02500813.nocrc
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Query sequence: hk10125
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                 336.1    2.3e-96   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1     187   549 ..     1   296 []   336.1  2.3e-96

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 187 to 549: score 336.1, E = 2.3e-96
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      ++++t      P     ++p+++       ++c++G+CIDLl++la 
     hk10125   187    KVICTG-----PNDTSPGSPRHT------VPQCCYGFCIDLLIKLAR 222  

                   ilgFtYelelVpDGkYGskdant....gnWnGmIgeLirgeADmAVapLT
                    ++FtYe++lV DGk+G++++ +++++++WnGm+geL++g ADm+VapLT
     hk10125   223 TMNFTYEVHLVADGKFGTQERVNnsnkKEWNGMMGELLSGQADMIVAPLT 272  

                   ItaeRervVDFTkPFmelGIsILvkkpdkqksslfsFLePfskkLAAfLT
                   I+ eR++++ F+kPF ++G++ILvkk+ + +s+l sF++Pf+     +L 
     hk10125   273 INNERAQYIKFSKPFKYQGLTILVKKEIP-RSTLDSFMQPFQST--LWLL 319  

                   vermesp...........................................
                   v   ++         ++ ++ ++ + ++++++++  + ++    + +   
     hk10125   320 VGLSVHVvavmlylldrfspfgrfkvnseeeeedaltlssamwfswgvll 369  

                   ................................................Is
                   +++ +++ +++ + +  +    +       + + +       ++++++I+
     hk10125   370 nsgigegaprsfsarilgmvwagfamiivasytanlaaflvldrpeerIT 419  

                   sveDLakrnpQtkieyGTvrgssTeefFkrpSkiptysrmwryMssrsks
                   +++D+++rnp++k+ y+Tv+ ss++ +F+r   +++ s m+r+M      
     hk10125   420 GINDPRLRNPSDKFIYATVKQSSVDIYFRR---QVELSTMYRHM------ 460  

                   psvfvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKLvtvGe
                   ++++++s++e++q+v+  k ++AF+++s++le+eas+   Cd  Lvt+Ge
     hk10125   461 EKHNYESAAEAIQAVRDNK-LHAFIWDSAVLEFEASQ--KCD--LVTTGE 505  

                   vfgskGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<-*
                   +f ++G+GI++ k+SP+++++S++ILk +E+G++e+L++ W ++   
     hk10125   506 LFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY    549  

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