# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohk10145.fasta.nr -Q hk10145.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hk10145, 415 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6825713 sequences Expectation_n fit: rho(ln(x))= 5.7148+/-0.000193; mu= 8.6724+/- 0.011 mean_var=100.0813+/-18.985, 0's: 40 Z-trim: 105 B-trim: 0 in 0/67 Lambda= 0.128203 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|20140568|sp|Q13148|TADBP_HUMAN TAR DNA-binding ( 414) 2826 532.9 4.4e-149 gi|130750552|gb|ABO32290.1| TDP43 [Homo sapiens] ( 416) 2826 532.9 4.4e-149 gi|75070499|sp|Q5R5W2.1|TADBP_PONAB TAR DNA-bindin ( 414) 2820 531.8 9.4e-149 gi|117644607|emb|CAL37794.1| hypothetical protein ( 414) 2819 531.6 1.1e-148 gi|62897067|dbj|BAD96474.1| TAR DNA binding protei ( 414) 2817 531.3 1.4e-148 gi|108996989|ref|XP_001102660.1| PREDICTED: TAR DN ( 414) 2814 530.7 2e-148 gi|189065487|dbj|BAG35326.1| unnamed protein produ ( 414) 2814 530.7 2e-148 gi|126328728|ref|XP_001364350.1| PREDICTED: simila ( 414) 2779 524.2 1.8e-146 gi|164448723|ref|NP_001039950.2| TAR DNA binding p ( 414) 2775 523.5 3e-146 gi|148682887|gb|EDL14834.1| mCG16669, isoform CRA_ ( 416) 2747 518.3 1.1e-144 gi|20140642|sp|Q921F2|TADBP_MOUSE TAR DNA-binding ( 414) 2741 517.2 2.4e-144 gi|149024635|gb|EDL81132.1| rCG31562, isoform CRA_ ( 414) 2736 516.3 4.5e-144 gi|74223342|dbj|BAE21557.1| unnamed protein produc ( 414) 2730 515.2 9.6e-144 gi|194208059|ref|XP_001492915.2| PREDICTED: simila ( 409) 2728 514.8 1.2e-143 gi|74149067|dbj|BAE32189.1| unnamed protein produc ( 414) 2720 513.3 3.5e-143 gi|82233907|sp|Q5ZLN5.1|TADBP_CHICK TAR DNA-bindin ( 414) 2705 510.6 2.4e-142 gi|38174066|gb|AAH61336.1| TAR DNA-binding protein ( 407) 2379 450.3 3.3e-124 gi|123915948|sp|Q28F51.1|TADBP_XENTR TAR DNA-bindi ( 409) 2379 450.3 3.3e-124 gi|20977028|gb|AAM33247.1| mitotic phosphoprotein ( 412) 2311 437.7 2.1e-120 gi|194388816|dbj|BAG61425.1| unnamed protein produ ( 330) 2248 425.9 5.6e-117 gi|29387090|gb|AAH49348.1| TAR DNA binding protein ( 412) 2052 389.8 5.4e-106 gi|26350443|dbj|BAC38861.1| unnamed protein produc ( 301) 1960 372.6 5.7e-101 gi|194381506|dbj|BAG58707.1| unnamed protein produ ( 298) 1940 368.9 7.3e-100 gi|149639085|ref|XP_001515396.1| PREDICTED: simila ( 309) 1939 368.8 8.6e-100 gi|126328724|ref|XP_001364432.1| PREDICTED: simila ( 304) 1900 361.6 1.3e-97 gi|119592079|gb|EAW71673.1| TAR DNA binding protei ( 298) 1895 360.6 2.3e-97 gi|33086856|gb|AAP92691.1| TARDBP S9 [Mus musculus ( 304) 1882 358.2 1.3e-96 gi|56204104|emb|CAI22099.1| TAR DNA binding protei ( 295) 1870 356.0 5.7e-96 gi|73950892|ref|XP_535409.2| PREDICTED: similar to ( 425) 1868 355.8 9.7e-96 gi|126328722|ref|XP_001364507.1| PREDICTED: simila ( 302) 1862 354.5 1.6e-95 gi|86824038|gb|AAI05528.1| TAR DNA binding protein ( 298) 1850 352.3 7.5e-95 gi|148682889|gb|EDL14836.1| mCG16669, isoform CRA_ ( 288) 1846 351.5 1.2e-94 gi|33086854|gb|AAP92690.1| TARDBP S8 [Mus musculus ( 302) 1844 351.2 1.6e-94 gi|148682886|gb|EDL14833.1| mCG16669, isoform CRA_ ( 300) 1842 350.8 2.1e-94 gi|26337419|dbj|BAC32395.1| unnamed protein produc ( 298) 1836 349.7 4.5e-94 gi|126328726|ref|XP_001364580.1| PREDICTED: simila ( 295) 1829 348.4 1.1e-93 gi|149639087|ref|XP_001515386.1| PREDICTED: simila ( 295) 1829 348.4 1.1e-93 gi|53734262|gb|AAH83752.1| TAR DNA binding protein ( 285) 1817 346.2 5e-93 gi|20071690|gb|AAH27105.1| TAR DNA binding protein ( 295) 1811 345.1 1.1e-92 gi|149024634|gb|EDL81131.1| rCG31562, isoform CRA_ ( 295) 1806 344.2 2.1e-92 gi|90074958|dbj|BAE87159.1| unnamed protein produc ( 298) 1787 340.6 2.4e-91 gi|116283521|gb|AAH29728.1| Tardbp protein [Mus mu ( 288) 1679 320.7 2.4e-85 gi|148682885|gb|EDL14832.1| mCG16669, isoform CRA_ ( 289) 1667 318.4 1.1e-84 gi|42542491|gb|AAH66430.1| Tardbpl protein [Danio ( 298) 1616 309.0 8e-82 gi|119592075|gb|EAW71669.1| TAR DNA binding protei ( 367) 1606 307.2 3.4e-81 gi|27882272|gb|AAH44405.1| TAR DNA binding protein ( 303) 1596 305.3 1.1e-80 gi|149024638|gb|EDL81135.1| rCG31562, isoform CRA_ ( 271) 1554 297.5 2.1e-78 gi|28278686|gb|AAH44271.1| Tardbp-prov protein [Xe ( 245) 1483 284.3 1.8e-74 gi|110758825|ref|XP_392590.3| PREDICTED: similar t ( 466) 1312 253.0 9.4e-65 gi|156551966|ref|XP_001602436.1| PREDICTED: simila ( 475) 1295 249.8 8.4e-64 >>gi|20140568|sp|Q13148|TADBP_HUMAN TAR DNA-binding prot (414 aa) initn: 2826 init1: 2826 opt: 2826 Z-score: 2831.8 bits: 532.9 E(): 4.4e-149 Smith-Waterman score: 2826; 100.000% identity (100.000% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 360 370 380 390 400 410 >>gi|130750552|gb|ABO32290.1| TDP43 [Homo sapiens] (416 aa) initn: 2826 init1: 2826 opt: 2826 Z-score: 2831.7 bits: 532.9 E(): 4.4e-149 Smith-Waterman score: 2826; 100.000% identity (100.000% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGMNH 360 370 380 390 400 410 >>gi|75070499|sp|Q5R5W2.1|TADBP_PONAB TAR DNA-binding pr (414 aa) initn: 2820 init1: 2820 opt: 2820 Z-score: 2825.8 bits: 531.8 E(): 9.4e-149 Smith-Waterman score: 2820; 99.758% identity (100.000% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|750 MSEYIRVTEDESDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 360 370 380 390 400 410 >>gi|117644607|emb|CAL37794.1| hypothetical protein [syn (414 aa) initn: 2819 init1: 2819 opt: 2819 Z-score: 2824.8 bits: 531.6 E(): 1.1e-148 Smith-Waterman score: 2819; 99.758% identity (100.000% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|117 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQLPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 360 370 380 390 400 410 >>gi|62897067|dbj|BAD96474.1| TAR DNA binding protein va (414 aa) initn: 2817 init1: 2817 opt: 2817 Z-score: 2822.8 bits: 531.3 E(): 1.4e-148 Smith-Waterman score: 2817; 99.758% identity (99.758% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: gi|628 SKQSQDEPLRSRKVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 360 370 380 390 400 410 >>gi|108996989|ref|XP_001102660.1| PREDICTED: TAR DNA bi (414 aa) initn: 2814 init1: 2814 opt: 2814 Z-score: 2819.8 bits: 530.7 E(): 2e-148 Smith-Waterman score: 2814; 99.517% identity (100.000% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM ::::::::::::::::::::::::::::::::::::::::::::.::::::::::.:::: gi|108 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQHNQSGPSGNNQSQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 360 370 380 390 400 410 >>gi|189065487|dbj|BAG35326.1| unnamed protein product [ (414 aa) initn: 2814 init1: 2814 opt: 2814 Z-score: 2819.8 bits: 530.7 E(): 2e-148 Smith-Waterman score: 2814; 99.758% identity (99.758% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: gi|189 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGVNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 360 370 380 390 400 410 >>gi|126328728|ref|XP_001364350.1| PREDICTED: similar to (414 aa) initn: 2779 init1: 2779 opt: 2779 Z-score: 2784.8 bits: 524.2 E(): 1.8e-146 Smith-Waterman score: 2779; 97.826% identity (99.275% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|126 LKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::: ::::::::::::::::::: ::::.:: :::.:.::::::::::::::::::::. gi|126 SKQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQV 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|126 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 360 370 380 390 400 410 >>gi|164448723|ref|NP_001039950.2| TAR DNA binding prote (414 aa) initn: 2775 init1: 2775 opt: 2775 Z-score: 2780.8 bits: 523.5 E(): 3e-146 Smith-Waterman score: 2775; 97.585% identity (99.275% similar) in 414 aa overlap (2-415:1-414) 10 20 30 40 50 60 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|164 MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEG 10 20 30 40 50 70 80 90 100 110 120 hk1014 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|164 ILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQD 60 70 80 90 100 110 130 140 150 160 170 180 hk1014 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN ::.::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|164 LKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPN 120 130 140 150 160 170 190 200 210 220 230 240 hk1014 SKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQI :::: ::::::::::::::::::: ::::.:: :::.:.::::::::::::::::::::. gi|164 SKQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQV 180 190 200 210 220 230 250 260 270 280 290 300 hk1014 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|164 AQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGL 240 250 260 270 280 290 310 320 330 340 350 360 hk1014 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|164 GNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGNM 300 310 320 330 340 350 370 380 390 400 410 hk1014 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|164 QREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 360 370 380 390 400 410 >>gi|148682887|gb|EDL14834.1| mCG16669, isoform CRA_e [M (416 aa) initn: 2747 init1: 2747 opt: 2747 Z-score: 2752.8 bits: 518.3 E(): 1.1e-144 Smith-Waterman score: 2747; 96.145% identity (99.036% similar) in 415 aa overlap (1-415:2-416) 10 20 30 40 50 hk1014 KMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AKMSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVE 10 20 30 40 50 60 60 70 80 90 100 110 hk1014 GILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GILHAPDAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQ 70 80 90 100 110 120 120 130 140 150 160 170 hk1014 DLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLP :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLP 130 140 150 160 170 180 180 190 200 210 220 230 hk1014 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ ::::: ::::::::::::::::::: .::..:: :::.:.:::::::::::::::::::. gi|148 NSKQSPDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 190 200 210 220 230 240 240 250 260 270 280 290 hk1014 IAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAG .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VAQSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAG 250 260 270 280 290 300 300 310 320 330 340 350 hk1014 LGNNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQNQGN ::::::.:::::::::::::::::::::::::::::::::::::::::::::::::.::. gi|148 LGNNQGGNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQSQGS 310 320 330 340 350 360 360 370 380 390 400 410 hk1014 MQREPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM ::::::::::::::::::::::: .::::::::::::::::::::::::::::::: gi|148 MQREPNQAFGSGNNSYSGSNSGAPLGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM 370 380 390 400 410 415 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 02:59:22 2008 done: Wed Aug 13 03:01:48 2008 Total Scan time: 821.880 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]