hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-03014930/chunk_1/iprscan-20080813-03014930.nocrc
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Query sequence: hk10145
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    107.3    2.4e-29   2
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    101.1      3e-27   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2     107   176 ..     1    74 []    63.1    6e-17
PF00076.12.ls   1/2     107   176 ..     1    74 []    65.1  2.1e-16
PF00076.12.fs   2/2     194   237 ..     1    51 [.    44.2  1.2e-11
PF00076.12.ls   2/2     194   258 ..     1    74 []    36.1  1.2e-07

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 107 to 176: score 63.1, E = 6e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V +Lp+ tte+dLk++Fs fG+++ +++++D    tg skGf+FV
     hk10145   107    LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD--LKTGHSKGFGFV 151  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F+ +e   k+++  + ++++gr + +   
     hk10145   152 RFTEYETQVKVMS--QRHMIDGRWCDC    176  

PF00076.12.ls: domain 1 of 2, from 107 to 176: score 65.1, E = 2.1e-16
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V +Lp+ tte+dLk++Fs fG+++ +++++D    tg skGf+FV
     hk10145   107    LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKD--LKTGHSKGFGFV 151  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F+ +e   k+++  + ++++gr + +   
     hk10145   152 RFTEYETQVKVMS--QRHMIDGRWCDC    176  

PF00076.12.fs: domain 2 of 2, from 194 to 237: score 44.2, E = 1.2e-11
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVg  ++d+te++L+++Fs++G+++++ i++         + faFV
     hk10145   194    VFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-------PFRAFAFV 233  

                   eFed<-*
                   +F+d   
     hk10145   234 TFAD    237  

PF00076.12.ls: domain 2 of 2, from 194 to 258: score 36.1, E = 1.2e-07
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fVg  ++d+te++L+++Fs++G+++++ i++         + faFV
     hk10145   194    VFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-------PFRAFAFV 233  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +F+d   A++        +++g  +++   
     hk10145   234 TFADDQIAQSLCG--EDLIIKGISVHI    258  

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