hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-03125734/chunk_1/iprscan-20080813-03125734.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk10385 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00122.10.fs E1-E2 ATPase 391.5 1.8e-118 1 PF00122.10.ls E1-E2 ATPase 393.4 3e-115 1 PF00689.11.ls Cation transporting ATPase, C-terminu 251.9 1.3e-72 1 PF00689.11.fs Cation transporting ATPase, C-terminu 249.9 4.8e-72 1 PF00690.16.fs Cation transporter/ATPase, N-terminus 133.0 1.9e-37 1 PF00690.16.ls Cation transporter/ATPase, N-terminus 134.9 2e-37 1 PF00702.16.fs haloacid dehalogenase-like hydrolase 74.1 7.6e-21 2 PF00702.16.ls haloacid dehalogenase-like hydrolase 70.3 5.8e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00690.16.fs 1/1 48 131 .. 1 87 [] 133.0 1.9e-37 PF00690.16.ls 1/1 48 131 .. 1 87 [] 134.9 2e-37 PF00122.10.ls 1/1 150 381 .. 1 245 [] 393.4 3e-115 PF00122.10.fs 1/1 150 381 .. 1 245 [] 391.5 1.8e-118 PF00702.16.ls 1/1 385 753 .. 1 183 [] 70.3 5.8e-18 PF00702.16.fs 1/2 385 648 .. 1 111 [. 31.7 9.7e-09 PF00702.16.fs 2/2 702 753 .. 128 183 .] 42.3 9.1e-12 PF00689.11.ls 1/1 849 1027 .. 1 197 [] 251.9 1.3e-72 PF00689.11.fs 1/1 849 1027 .. 1 197 [] 249.9 4.8e-72 Alignments of top-scoring domains: PF00690.16.fs: domain 1 of 1, from 48 to 131: score 133.0, E = 1.9e-37 *->eelkkevdldahkltvEevleklktdpeeGLsseeaaeRlkkyGpNe +elkkev++d+hkl+++e+ +k++td+++GL+s+ aae l+++GpN+ hk10385 48 DELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNA 94 LppekktslwlkfLeQFkdplvllLlaAAiiSALdfvlgg<-* L+p+++t++w+kf++Q+++++++lL+++Ai++ f+++ hk10385 95 LTPPPTTPEWIKFCRQLFGGFSMLLWIGAILC---FLAYS 131 PF00690.16.ls: domain 1 of 1, from 48 to 131: score 134.9, E = 2e-37 *->eelkkevdldahkltvEevleklktdpeeGLsseeaaeRlkkyGpNe +elkkev++d+hkl+++e+ +k++td+++GL+s+ aae l+++GpN+ hk10385 48 DELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNA 94 LppekktslwlkfLeQFkdplvllLlaAAiiSALdfvlgg<-* L+p+++t++w+kf++Q+++++++lL+++Ai++ f+++ hk10385 95 LTPPPTTPEWIKFCRQLFGGFSMLLWIGAILC---FLAYS 131 PF00122.10.ls: domain 1 of 1, from 150 to 381: score 393.4, E = 3e-115 *->villivllnatlefyqesrAekAleaLkklvpptAtVlRdGgkeeei v+ ++v++++++++yqe++++k++e++k++vp++A V+R+G + +i hk10385 150 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNG-EKMSI 195 paeeLvpGDiVevkpGdrVPADgrvvegestLkVDESaLTGESlPVeKhs +aee+v+GD+Vevk Gdr+PAD+r++++++ +kVD+S+LTGES+P+++ s hk10385 196 NAEEVVVGDLVEVKGGDRIPADLRIISANG-CKVDNSSLTGESEPQTR-S 243 dvvtpdnplergnmVfaGTlvvsGsltgvVtatGddTflgkIakLVeeAq +++t++nple++n++f++T++v+G+++g+V+ tGd+T++g+Ia+L ++ + hk10385 244 PDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLE 293 ssktPlQrlldkfgkiltpvililavlvfiiwllrnfnaafggswlegll +++tP+ +++++f +i+t v+++l+v +fi+ l++ ++wle hk10385 294 GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLIL------EYTWLE--- 334 yalifavallVaAcPegLplvvtvalalGtgrmAkkgaLVKglpAvEt<- a+if+++++Va++PegL ++vtv+l+l+++rmA+k++LVK+l+AvEt hk10385 335 -AVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVET 381 * hk10385 - - PF00122.10.fs: domain 1 of 1, from 150 to 381: score 391.5, E = 1.8e-118 *->villivllnatlefyqesrAekAleaLkklvpptAtVlRdGgkeeei v+ ++v++++++++yqe++++k++e++k++vp++A V+R+G + +i hk10385 150 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNG-EKMSI 195 paeeLvpGDiVevkpGdrVPADgrvvegestLkVDESaLTGESlPVeKhs +aee+v+GD+Vevk Gdr+PAD+r++++++ +kVD+S+LTGES+P+++ s hk10385 196 NAEEVVVGDLVEVKGGDRIPADLRIISANG-CKVDNSSLTGESEPQTR-S 243 dvvtpdnplergnmVfaGTlvvsGsltgvVtatGddTflgkIakLVeeAq +++t++nple++n++f++T++v+G+++g+V+ tGd+T++g+Ia+L ++ + hk10385 244 PDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATLASGLE 293 ssktPlQrlldkfgkiltpvililavlvfiiwllrnfnaafggswlegll +++tP+ +++++f +i+t v+++l+v +fi+ l++ ++wle hk10385 294 GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLIL------EYTWLE--- 334 yalifavallVaAcPegLplvvtvalalGtgrmAkkgaLVKglpAvEt<- a+if+++++Va++PegL ++vtv+l+l+++rmA+k++LVK+l+AvEt hk10385 335 -AVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVET 381 * hk10385 - - PF00702.16.ls: domain 1 of 1, from 385 to 753: score 70.3, E = 5.8e-18 *->ikavvFDkDGTLtdgk............................... + +++ Dk+GTLt+ + + + +++ ++ ++++++++ + ++++ hk10385 385 TSTICSDKTGTLTQNRmtvahmwfdnqiheadttenqsgvsfdktsa 431 ............eppiaeaiveaaaelgl.lpleevekllgrgl.g.... + ++ + ++ +a +e ++ l ++ ++ e++l++ ++ ++ hk10385 432 twlalsriaglcNRAVFQANQENLPILKRaVAGDASESALLKCIeLccgs 481 erilleggltaell.................................... ++ + e ++++++++ +++++ + +++++++++ + ++ +++ + hk10385 482 VKEMRERYAKIVEIpfnstnkyqlsihknpntsepqhllvmkgaperild 531 .................................................. + ++ ++++ + +++ ++ + + ++ +++ + + +++ + hk10385 532 rcssillhgkeqpldeelkdafqnaylelgglgervlgfchlflpdeqfp 581 ...............d.evlglial.dklypgarealkaLkrrGikvail ++ ++++ + + ++ +++gli d+++ +++a+ +++++Gikv+++ hk10385 582 egfqfdtddvnfpidNlCFVGLISMiDPPRAAVPDAVGKCRSAGIKVIMV 631 Tggdr.naeallealgla.lfdviidsdevggvgpivvgKPkpeifllal Tg+++ +a+a +a+ +++i + e+ + ++ hk10385 632 TGDHPiTAKA------IAkGVGIISEGNETV---------------EDIA 660 erlgvkpeevg....................................... rl++++++v++++ + ++++ ++ ++++ ++ + +++ ++++ hk10385 661 ARLNIPVSQVNprdakacvvhgsdlkdmtseqlddilkyhteivfartsp 710 .............pe.vlmVGDgvnDapalaaAGvgvamgngg<-* +++ ++ ++++ v++ GDgvnD pal++A++gvamg +g hk10385 711 qqkliivegcqrqGAiVAVTGDGVNDSPALKKADIGVAMGIAG 753 PF00702.16.fs: domain 1 of 2, from 385 to 648: score 31.7, E = 9.7e-09 *->ikavvFDkDGTLtdgk............................... + +++ Dk+GTLt+ + + + +++ ++ ++++++++ + ++++ hk10385 385 TSTICSDKTGTLTQNRmtvahmwfdnqiheadttenqsgvsfdktsa 431 ............eppiaeaiveaaaelgl.lpleevekllgrgl.g.... + ++ + ++ +a +e ++ l ++ ++ e++l++ ++ ++ hk10385 432 twlalsriaglcNRAVFQANQENLPILKRaVAGDASESALLKCIeLccgs 481 erilleggltaell.................................... ++ + e ++++++++ +++++ + +++++++++ + ++ +++ + hk10385 482 VKEMRERYAKIVEIpfnstnkyqlsihknpntsepqhllvmkgaperild 531 .................................................. + ++ ++++ + +++ ++ + + ++ +++ + + +++ + hk10385 532 rcssillhgkeqpldeelkdafqnaylelgglgervlgfchlflpdeqfp 581 ...............d.evlglial.dklypgarealkaLkrrGikvail ++ ++++ + + ++ +++gli d+++ +++a+ +++++Gikv+++ hk10385 582 egfqfdtddvnfpidNlCFVGLISMiDPPRAAVPDAVGKCRSAGIKVIMV 631 Tggdr.naeallealgl<-* Tg+++ +a+a+++ g+ hk10385 632 TGDHPiTAKAIAKGVGI 648 PF00702.16.fs: domain 2 of 2, from 702 to 753: score 42.3, E = 9.1e-12 *->pivvgKPkpeifllalerlgvkpeevgpevlmVGDgvnDapalaaAG +iv+++ +p+ +l ++e ++ +++ v ++ GDgvnD pal++A+ hk10385 702 EIVFARTSPQQKLIIVEGCQRQGAIV----AVTGDGVNDSPALKKAD 744 vgvamgngg<-* +gvamg +g hk10385 745 IGVAMGIAG 753 PF00689.11.ls: domain 1 of 1, from 849 to 1027: score 251.9, E = 1.3e-72 *->RpPRnpk.DeliitgllffrylviGvivavatlaaFvwwfygggenG R+PRnpk+D+l++++l++++y +iG+i+a+++ F+++f++ +enG hk10385 849 RQPRNPKtDKLVNERLISMAYGQIGMIQALGG---FFTYFVILAENG 892 idfgPgllygqlthwescsandledsfkgqewCeifrkglefratTmaFt f+P l+g++ +w++ +nd+eds+ gq+w++++rk++ef+++T++F+ hk10385 893 --FLPIHLLGLRVDWDDRWINDVEDSY-GQQWTYEQRKIVEFTCHTAFFV 939 vlVviqmfNAWEalncrsefFmhPldrnSlfqmgplwrNkwLllAvvlsl ++Vv+q+++ +++c+++ rnS+fq+g ++Nk+L+++++ ++ hk10385 940 SIVVVQWAD---LVICKTR-------RNSVFQQG--MKNKILIFGLFEET 977 alqllivYvPglqtiFqthpllslqeWlvvlpfsflvfildEirKfikRr al++++ Y+Pg+ ++ +++l++++W++++p s+l+f++dE+rK+i+Rr hk10385 978 ALAAFLSYCPGMGVALR-MYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRR 1026 r<-* r hk10385 1027 R 1027 PF00689.11.fs: domain 1 of 1, from 849 to 1027: score 249.9, E = 4.8e-72 *->RpPRnpk.DeliitgllffrylviGvivavatlaaFvwwfygggenG R+PRnpk+D+l++++l++++y +iG+i+a+++ F+++f++ +enG hk10385 849 RQPRNPKtDKLVNERLISMAYGQIGMIQALGG---FFTYFVILAENG 892 idfgPgllygqlthwescsandledsfkgqewCeifrkglefratTmaFt f+P l+g++ +w++ +nd+eds+ gq+w++++rk++ef+++T++F+ hk10385 893 --FLPIHLLGLRVDWDDRWINDVEDSY-GQQWTYEQRKIVEFTCHTAFFV 939 vlVviqmfNAWEalncrsefFmhPldrnSlfqmgplwrNkwLllAvvlsl ++Vv+q+++ +++c+++ rnS+fq+g ++Nk+L+++++ ++ hk10385 940 SIVVVQWAD---LVICKTR-------RNSVFQQG--MKNKILIFGLFEET 977 alqllivYvPglqtiFqthpllslqeWlvvlpfsflvfildEirKfikRr al++++ Y+Pg+ ++ +++l++++W++++p s+l+f++dE+rK+i+Rr hk10385 978 ALAAFLSYCPGMGVALR-MYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRR 1026 r<-* r hk10385 1027 R 1027 //