hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-03125734/chunk_1/iprscan-20080813-03125734.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hk10385 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01106 ATPase-IIC_X-K: Na,H/K antiporter P-ty 2548.7 0 1 TIGR01494 ATPase_P-type: ATPase, P-type (transpo 421.4 4.2e-124 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01106 1/1 42 1038 .] 1 998 [] 2548.7 0 TIGR01494 1/5 150 242 .. 1 93 [. 87.6 1.2e-23 TIGR01494 2/5 294 420 .. 123 246 .. 112.6 3.8e-31 TIGR01494 4/5 599 649 .. 316 366 .. 66.1 1.3e-17 TIGR01494 5/5 704 823 .. 365 478 .] 148.4 6.5e-42 Alignments of top-scoring domains: TIGR01106: domain 1 of 1, from 42 to 1038: score 2548.7, E = 0 *->kkkekleelkkElelddHklsleelerkyqtdlekGLsearaaelLa kk+++++elkkE+++ddHklsl+el+rky+tdl++GL++araae+La hk10385 42 KKDRDMDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILA 88 RDGpnaLtPPkqtPEwvKFcrqlfGGfsiLlWigailCflAygiqaseee RDGpnaLtPP++tPEw+KFcrqlfGGfs+LlWigailCflAy+iqa++ee hk10385 89 RDGPNALTPPPTTPEWIKFCRQLFGGFSMLLWIGAILCFLAYSIQAATEE 138 epsddnlYLgivLsavvivtGvFsYYqEaKsskimesFknmvPqqAlviR ep++dnlYLg+vLsavvi+tG+FsYYqEaKsskimesFknmvPqqAlviR hk10385 139 EPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIR 188 dgeKlsinaeqlvvGdlvevkgGDriPadlRiisakgckvDnssLtGEsE +geK+sinae++vvGdlvevkgGDriPadlRiisa+gckvDnssLtGEsE hk10385 189 NGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESE 238 PqtRspefthenPlEtkniaffstncvegtakGivvstGDrtviGriAsL PqtRsp+ft+enPlEt+niaffstncvegta+Givv+tGDrtv+GriA+L hk10385 239 PQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATL 288 AsGlengktPiAiEieHFihiitGvAvflGvsFfiialilgYtwLeaviF AsGle+g+tPiA+EieHFihiitGvAvflGvsFfi++lil+YtwLeaviF hk10385 289 ASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIF 338 ligiivAnvPEGLLAtvtvcLtltAKrmAkKnClvKnLEAvetLGstsvi ligiivAnvPEGLLAtvtvcLtltAKrmA+KnClvKnLEAvetLGsts+i hk10385 339 LIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTI 388 CsDKtGtLtqnrmtvahlWfDnqiheADttEdqsgvsfDkssetwkaLsr CsDKtGtLtqnrmtvah+WfDnqiheADttE+qsgvsfDk+s+tw aLsr hk10385 389 CSDKTGTLTQNRMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWLALSR 438 iatLCnRAeFkagqdnvpvlkkevaGDAsEtAlLKfiElslGdvmeiRer ia+LCnRA+F+a+q+n+p+lk++vaGDAsE+AlLK+iEl++G+v+e+Rer hk10385 439 IAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRER 488 nkKvaEiPFnstnKyqlsiHetedpsdkryllvmKGAPEriLerCstili ++K++EiPFnstnKyqlsiH++ ++s++++llvmKGAPEriL+rCs+il+ hk10385 489 YAKIVEIPFNSTNKYQLSIHKNPNTSEPQHLLVMKGAPERILDRCSSILL 538 kGkeqpLdeelkeafqnAYleLGGLGERvLGFchlyLpedqyPegfkFdv +GkeqpLdeelk+afqnAYleLGGLGERvLGFchl+Lp++q+Pegf+Fd+ hk10385 539 HGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFDT 588 devnFptenLcFvGLlsmidPPRaavPDAvaKCRsAGikvimvtGDHPit d+vnFp++nLcFvGL+smidPPRaavPDAv+KCRsAGikvimvtGDHPit hk10385 589 DDVNFPIDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT 638 AKAiAksvGiisegnEtvEDiAaRLnipveqvnkrdAkAcvvhGaeLkDm AKAiAk+vGiisegnEtvEDiAaRLnipv+qvn+rdAkAcvvhG++LkDm hk10385 639 AKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 688 sseqldeiLknhtEivFARtsPqqKLiivEgCqRqgAivAvtGDGvnDsP +seqld+iLk+htEivFARtsPqqKLiivEgCqRqgAivAvtGDGvnDsP hk10385 689 TSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSP 738 AlKKADiGvAmGiaGsDvsKqAADmiLLDDnFAsivtGvEeGRLiFDnLK AlKKADiGvAmGiaGsDvsKqAADmiLLDDnFAsivtGvEeGRLiFDnLK hk10385 739 ALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK 788 KsiaYtLtsnipEitPfLifiivniPLPlGtitiLcidLgtDivPaisLA KsiaYtLtsnipEitPfLifii+niPLPlGt+tiLcidLgtD+vPaisLA hk10385 789 KSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLA 838 YekAEsDimkrkPrnpkrDkLvnerLislaYgqiGmiqalagFftYFvil Ye+AEsDimkr+Prnpk+DkLvnerLis+aYgqiGmiqal+gFftYFvil hk10385 839 YEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFTYFVIL 888 AenGflPskllglRveWddkavndleDsyGqeWtyeqRkvleytcytaFF AenGflP +llglRv+Wdd+++nd+eDsyGq+WtyeqRk++e+tc+taFF hk10385 889 AENGFLPIHLLGLRVDWDDRWINDVEDSYGQQWTYEQRKIVEFTCHTAFF 938 vsivvvqwADliirKtRRnsvFqqGlmrnkilifglveetalaafLsYcp vsivvvqwADl+i+KtRRnsvFqqG m+nkilifgl+eetalaafLsYcp hk10385 939 VSIVVVQWADLVICKTRRNSVFQQG-MKNKILIFGLFEETALAAFLSYCP 987 GmetalrlyplkltwWlvalPysllifvYDEiRklilRrnPGgWveketY Gm +alr+yplk+twW++a+PysllifvYDE+Rkli+Rr+PGgWveketY hk10385 988 GMGVALRMYPLKPTWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWVEKETY 1037 Y<-* Y hk10385 1038 Y 1038 TIGR01494: domain 1 of 5, from 150 to 242: score 87.6, E = 1.2e-23 *->viliivllfvlletlqkeaaedalrslkdkelnpqkvtvlrnggve. v++++v++ +++++q+ +++++++s k+ + pq + v+rng++++ hk10385 150 VLSAVVIITGCFSYYQEAKSSKIMESFKN--MVPQQALVIRNGEKMs 194 isskdlvvGDiVlvkkGdivPADgvLLsgs.cyVdessLTGEsnpvlK<- i ++++vvGD+V+vk Gd++PAD++++s ++c+Vd ssLTGEs+p ++ hk10385 195 INAEEVVVGDLVEVKGGDRIPADLRIISANgCKVDNSSLTGESEPQTR 242 * hk10385 - - TIGR01494: domain 2 of 5, from 294 to 420: score 112.6, E = 3.8e-31 *->fektplqrkldrlafifilfllllalsvflltliglwtffkiflral +++tp+ + ++ +i+++++++l++s+f+l+li +t+++++++ + hk10385 294 GGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLI 340 illviaiPiaLpvavtialavgdkrma...ilvrslnalEelGqvdyics +++v+ +P++L ++vt++l++ +krma++++lv++l+a+E+lG+ ++ics hk10385 341 GIIVANVPEGLLATVTVCLTLTAKRMArknCLVKNLEAVETLGSTSTICS 390 DKTGTLTenkmtfkkvyiggeyqagsPdEk<-* DKTGTLT+n mt+ +++ ++ + + +E+ hk10385 391 DKTGTLTQNRMTVAHMWFDNQIHEADTTEN 420 TIGR01494: domain 4 of 5, from 599 to 649: score 66.1, E = 1.3e-17 *->ellGltaieDpLredvketIeeLkraGikvwMlTGDnveTAiaIAke +++Gl+ + Dp+r+ v++++ +++ aGikv+M+TGD+++TA+aIAk hk10385 599 CFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKG 645 cglf<-* +g++ hk10385 646 VGII 649 TIGR01494: domain 5 of 5, from 704 to 823: score 148.4, E = 6.5e-42 *->lfARvsPeqKaeiVellqkrgaiVamiGDGaNDapALkaADVGiaig +fAR+sP+qK+ iVe +q++gaiVa++GDG+ND pALk+AD+G+a+g hk10385 704 VFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMG 750 ......AkaaaDivltddnlslivlllvhGRwtykrikklilyalyynli +++ +k+aaD++l+ddn+++iv+ +++GR +++++kk i y+l++n+ hk10385 751 iagsdvSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIP 800 liillfvlsvinllftslpalal<-* +i +++++++ n ++ + + +l hk10385 801 EITPFLIFIIANIPLPLGTVTIL 823 //