hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-17103775/chunk_1/iprscan-20090618-17103775.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hm00122 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00554.13.ls Rel homology domain (RHD) 377.2 2.4e-110 1 PF00554.13.fs Rel homology domain (RHD) 375.3 8.8e-110 1 PF00023.20.ls Ankyrin repeat 150.1 5.3e-42 6 PF00023.20.fs Ankyrin repeat 140.5 4.2e-39 6 PF01833.14.fs IPT/TIG domain 68.3 4.5e-19 1 PF01833.14.ls IPT/TIG domain 70.1 6.5e-18 1 PF00531.12.fs Death domain 55.0 2e-14 1 PF00531.12.ls Death domain 56.9 6.3e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00554.13.fs 1/1 63 261 .. 1 199 [] 375.3 8.8e-110 PF00554.13.ls 1/1 63 261 .. 1 199 [] 377.2 2.4e-110 PF01833.14.ls 1/1 269 368 .. 1 104 [] 70.1 6.5e-18 PF01833.14.fs 1/1 269 368 .. 1 104 [] 68.3 4.5e-19 PF00023.20.fs 1/6 561 583 .. 1 23 [. 15.4 0.0027 PF00023.20.ls 1/6 561 599 .. 1 33 [] 15.0 0.2 PF00023.20.ls 2/6 600 632 .. 1 33 [] 34.8 2.7e-07 PF00023.20.fs 2/6 600 632 .. 1 33 [] 32.8 3.6e-08 PF00023.20.fs 3/6 633 665 .. 1 33 [] 16.5 0.0013 PF00023.20.ls 3/6 633 665 .. 1 33 [] 18.5 0.022 PF00023.20.fs 4/6 669 701 .. 1 33 [] 27.4 1.2e-06 PF00023.20.ls 4/6 669 701 .. 1 33 [] 29.4 1.2e-05 PF00023.20.fs 5/6 703 736 .. 1 33 [] 18.2 0.00044 PF00023.20.ls 5/6 703 736 .. 1 33 [] 20.2 0.0071 PF00023.20.ls 6/6 737 769 .. 1 33 [] 32.3 1.6e-06 PF00023.20.fs 6/6 737 769 .. 1 33 [] 30.3 1.9e-07 PF00531.12.fs 1/1 836 911 .. 1 87 [] 55.0 2e-14 PF00531.12.ls 1/1 836 911 .. 1 87 [] 56.9 6.3e-14 Alignments of top-scoring domains: PF00554.13.fs: domain 1 of 1, from 63 to 261: score 375.3, E = 8.8e-110 *->LeIvEQPkQRGmRFRYkCEMGRSaGSIpGmesStrskKTfPtVqicn L+I+EQPkQRG+RFRY+CE G+S+G++pG +sS+++kK++P+V+icn hm00122 63 LQILEQPKQRGFRFRYVCE-GPSHGGLPG-ASSEKNKKSYPQVKICN 107 YdGpavtirVsLVTkdePhrPHpFYQvHsLVGKessdCkdGkvDvtdvce Y+Gpa+ ++V+LVT+ ++++ H+ HsLVGK +C+dG +c+ hm00122 108 YVGPAK-VIVQLVTNGKNIHLHA----HSLVGK---HCEDG------ICT 143 vevgPetdmvasFqNLGIqcVkKKdveealkeRikkqlvremnr...... v+ gP+ dmv+ F NLGI++V+KK+v+e+l++R++++++r++n++ ++ hm00122 144 VTAGPK-DMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPgllvhp 192 ............relnidpfneveqealrqikdmDLnvVRLCFqaflepd + + +++++r+l+ ++++ ++q al+q+k+mDL+vVRL+F+afl pd hm00122 193 dlaylqaegggdRQLGDREKELIRQAALQQTKEMDLSVVRLMFTAFL-PD 241 stGnftlplpPVvSnPIyDk<-* stG ft++l+PVvS++IyD+ hm00122 242 STGSFTRRLEPVVSDAIYDS 261 PF00554.13.ls: domain 1 of 1, from 63 to 261: score 377.2, E = 2.4e-110 *->LeIvEQPkQRGmRFRYkCEMGRSaGSIpGmesStrskKTfPtVqicn L+I+EQPkQRG+RFRY+CE G+S+G++pG +sS+++kK++P+V+icn hm00122 63 LQILEQPKQRGFRFRYVCE-GPSHGGLPG-ASSEKNKKSYPQVKICN 107 YdGpavtirVsLVTkdePhrPHpFYQvHsLVGKessdCkdGkvDvtdvce Y+Gpa+ ++V+LVT+ ++++ H+ HsLVGK +C+dG +c+ hm00122 108 YVGPAK-VIVQLVTNGKNIHLHA----HSLVGK---HCEDG------ICT 143 vevgPetdmvasFqNLGIqcVkKKdveealkeRikkqlvremnr...... v+ gP+ dmv+ F NLGI++V+KK+v+e+l++R++++++r++n++ ++ hm00122 144 VTAGPK-DMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPgllvhp 192 ............relnidpfneveqealrqikdmDLnvVRLCFqaflepd + + +++++r+l+ ++++ ++q al+q+k+mDL+vVRL+F+afl pd hm00122 193 dlaylqaegggdRQLGDREKELIRQAALQQTKEMDLSVVRLMFTAFL-PD 241 stGnftlplpPVvSnPIyDk<-* stG ft++l+PVvS++IyD+ hm00122 242 STGSFTRRLEPVVSDAIYDS 261 PF01833.14.ls: domain 1 of 1, from 269 to 368: score 70.1, E = 6.5e-18 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt ++I ++ ++g+++GG+ei+++++++++ +di+++ hm00122 269 LKIVRMDRTAGCVTGGEEIYLLCDKVQK-------------DDIQIR 302 fggtpv............pCdvissssstqivCktPpva.ggpsppv.vt f +++ +++ ++ ++ +p dv+++ + iv+ktP++ + +++ p++v+ hm00122 303 FYEEEEnggvwegfgdfsPTDVHRQFA---IVFKTPKYKdINITKPAsVF 349 vsvdgggsgdgrssspvtFtY<-* v++ + + d+++s+p++F Y hm00122 350 VQLRRKS--DLETSEPKPFLY 368 PF01833.14.fs: domain 1 of 1, from 269 to 368: score 68.3, E = 4.5e-19 *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt ++I ++ ++g+++GG+ei+++++++++ +di+++ hm00122 269 LKIVRMDRTAGCVTGGEEIYLLCDKVQK-------------DDIQIR 302 fggtpv............pCdvissssstqivCktPpva.ggpsppv.vt f +++ +++ ++ ++ +p dv+++ + iv+ktP++ + +++ p++v+ hm00122 303 FYEEEEnggvwegfgdfsPTDVHRQFA---IVFKTPKYKdINITKPAsVF 349 vsvdgggsgdgrssspvtFtY<-* v++ + + d+++s+p++F Y hm00122 350 VQLRRKS--DLETSEPKPFLY 368 PF00023.20.fs: domain 1 of 6, from 561 to 583: score 15.4, E = 0.0027 *->dGfTPLHlAalrgnlevvklLls<-* +G++ LHlA+++ + ++v++Ll+ hm00122 561 NGDSVLHLAIIHLHSQLVRDLLE 583 PF00023.20.ls: domain 1 of 6, from 561 to 599: score 15.0, E = 0.2 *->dGfTPLHlAalrgnlevvklLls......qGAdlnaqdd<-* +G++ LHlA+++ + ++v++Ll+ +++ +n+++d hm00122 561 NGDSVLHLAIIHLHSQLVRDLLEvtsgliSDDIINMRND 599 PF00023.20.ls: domain 2 of 6, from 600 to 632: score 34.8, E = 2.7e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPLHlA++ +++vv++Ll +GAdl + d+ hm00122 600 LYQTPLHLAVITKQEDVVEDLLRAGADLSLLDR 632 PF00023.20.fs: domain 2 of 6, from 600 to 632: score 32.8, E = 3.6e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +TPLHlA++ +++vv++Ll +GAdl + d+ hm00122 600 LYQTPLHLAVITKQEDVVEDLLRAGADLSLLDR 632 PF00023.20.fs: domain 3 of 6, from 633 to 665: score 16.5, E = 0.0013 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G++ LHlAa+ g+ +v++ Ll++ + d hm00122 633 LGNSVLHLAAKEGHDKVLSILLKHKKAALLLDH 665 PF00023.20.ls: domain 3 of 6, from 633 to 665: score 18.5, E = 0.022 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G++ LHlAa+ g+ +v++ Ll++ + d hm00122 633 LGNSVLHLAAKEGHDKVLSILLKHKKAALLLDH 665 PF00023.20.fs: domain 4 of 6, from 669 to 701: score 27.4, E = 1.2e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG ++HlA ++++l ++ lL+ +GAd+naq hm00122 669 DGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQ 701 PF00023.20.ls: domain 4 of 6, from 669 to 701: score 29.4, E = 1.2e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG ++HlA ++++l ++ lL+ +GAd+naq hm00122 669 DGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQ 701 PF00023.20.fs: domain 5 of 6, from 703 to 736: score 18.2, E = 0.00044 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* G+T+LHlA++++n++++ +Ll + A ++ ++ hm00122 703 SGRTALHLAVEHDNISLAGCLLLeGDAHVDSTTY 736 PF00023.20.ls: domain 5 of 6, from 703 to 736: score 20.2, E = 0.0071 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* G+T+LHlA++++n++++ +Ll + A ++ ++ hm00122 703 SGRTALHLAVEHDNISLAGCLLLeGDAHVDSTTY 736 PF00023.20.ls: domain 6 of 6, from 737 to 769: score 32.3, E = 1.6e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG TPLH+Aa rg+++++ lL +GAd+ + + hm00122 737 DGTTPLHIAAGRGSTRLAALLKAAGADPLVENF 769 PF00023.20.fs: domain 6 of 6, from 737 to 769: score 30.3, E = 1.9e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG TPLH+Aa rg+++++ lL +GAd+ + + hm00122 737 DGTTPLHIAAGRGSTRLAALLKAAGADPLVENF 769 PF00531.12.fs: domain 1 of 1, from 836 to 911: score 55.0, E = 2e-14 *->eklcallDpdellgkdWkeLArkLglseneIdeiesdenpgdlrspt +l++ll + +++ k+W +LA+kLgl + ++ + p+ hm00122 836 LQLYKLL-EIPDPDKNWATLAQKLGL-GILNNAFRL-SP-----APS 874 yeLLrlWeqrhGknatvgtLleaLrklgrrdaaellesal<-* ++L +++e + ++tv +L+eaLr++g +a+e++++a+ hm00122 875 KTLMDNYEVS---GGTVRELVEALRQMGYTEAIEVIQAAS 911 PF00531.12.ls: domain 1 of 1, from 836 to 911: score 56.9, E = 6.3e-14 *->eklcallDpdellgkdWkeLArkLglseneIdeiesdenpgdlrspt +l++ll + +++ k+W +LA+kLgl + ++ + p+ hm00122 836 LQLYKLL-EIPDPDKNWATLAQKLGL-GILNNAFRL-SP-----APS 874 yeLLrlWeqrhGknatvgtLleaLrklgrrdaaellesal<-* ++L +++e + ++tv +L+eaLr++g +a+e++++a+ hm00122 875 KTLMDNYEVS---GGTVRELVEALRQMGYTEAIEVIQAAS 911 //