hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-17103775/chunk_1/iprscan-20090618-17103775.nocrc
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Query sequence: hm00122
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00248                                                 126.2    3.6e-33   6
SM00429                                                  92.9    3.8e-23   1
SM00005                                                  70.2    2.6e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00429    1/1     268   369 ..     1   111 []    92.9  3.8e-23
SM00248    1/6     561   591 ..     1    30 []    12.2       75
SM00248    2/6     600   629 ..     1    30 []    26.5   0.0036
SM00248    3/6     633   662 ..     1    30 []    19.7      0.4
SM00248    4/6     669   698 ..     1    30 []    27.1   0.0024
SM00248    5/6     703   733 ..     1    30 []    20.8     0.19
SM00248    6/6     737   766 ..     1    30 []    19.8     0.39
SM00005    1/1     824   911 ..     1   108 []    70.2  2.6e-16

Alignments of top-scoring domains:
SM00429: domain 1 of 1, from 268 to 369: score 92.9, E = 3.8e-23
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      +++I r++ + G + GG+e+++lc+k++++d++ +f++ +++G vWe
     hm00122   268    NLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWE 314  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgf.dng
                     + f+p+dvh   ++ aiv++tP y +   ++++ p +v   v++++ +
     hm00122   315 GFGDFSPTDVH---RQFAIVFKTPKYKD---INITKPASV--FVQLrRKS 356  

                   gvrtelsppspFtYv<-*
                   + +t  s+p+pF Y+   
     hm00122   357 DLET--SEPKPFLYY    369  

SM00248: domain 1 of 6, from 561 to 591: score 12.2, E = 75
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                      +G++ LHlA+ + +  +v+ Ll+   + i +   
     hm00122   561    NGDSVLHLAIIHLHSQLVRDLLEVTSgLISD    591  

SM00248: domain 2 of 6, from 600 to 629: score 26.5, E = 0.0036
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                        +TpLHlA+ +++++vv+ Ll++gad+ +   
     hm00122   600    LYQTPLHLAVITKQEDVVEDLLRAGADLSL    629  

SM00248: domain 3 of 6, from 633 to 662: score 19.7, E = 0.4
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G++ LHlAa++g+ +v+ +Ll+++    +   
     hm00122   633    LGNSVLHLAAKEGHDKVLSILLKHKKAALL    662  

SM00248: domain 4 of 6, from 669 to 698: score 27.1, E = 0.0024
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG +++HlA+++++l ++ lL+ +gad+na   
     hm00122   669    DGLNAIHLAMMSNSLPCLLLLVAAGADVNA    698  

SM00248: domain 5 of 6, from 703 to 733: score 20.8, E = 0.19
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                       GrT+LHlA+e++n++++ +Ll +g   ++    
     hm00122   703    SGRTALHLAVEHDNISLAGCLLLEGDaHVDS    733  

SM00248: domain 6 of 6, from 737 to 766: score 19.8, E = 0.39
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dG TpLH+Aa +g+  ++ lL  +gad+ +   
     hm00122   737    DGTTPLHIAAGRGSTRLAALLKAAGADPLV    766  

SM00005: domain 1 of 1, from 824 to 911: score 70.2, E = 2.6e-16
                   *->pagaaslteltreklaklldhpldlgddWreLArkLglseaeidqie
                      ++++ +l e+ + +l+kll++ +d+ + W++LA+kLgl+ ++  +  
     hm00122   824    QGDMKQLAEDVKLQLYKLLEI-PDPDKNWATLAQKLGLGILNNAFRL 869  

                   tesprelnAyyeddlreqsyqlLrlWeqregkneqatlgtLleaLrkmgr
                   + +p              s+ l++++e ++g     t+ +L+eaLr+mg+
     hm00122   870 SPAP--------------SKTLMDNYEVSGG-----TVRELVEALRQMGY 900  

                   ddavellrsel<-*
                    +a+e ++ ++   
     hm00122   901 TEAIEVIQAAS    911  

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