hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-03182679/chunk_1/iprscan-20080813-03182679.nocrc
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Query sequence: hm00142
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00324                                                 223.9    1.4e-62   1
SM00233                                                  52.3    6.2e-11   1
SM00456                                                  36.9    2.8e-06   2
SM00326                                                  28.5    0.00092   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00326     1/1      15    73 ..     1    58 []    28.5  0.00092
SM00456     1/2     266   298 ..     1    34 []    29.1  0.00061
SM00456     2/2     312   344 ..     1    34 []     7.8      9.9
SM00233     1/1     412   525 ..     1    82 []    52.3  6.2e-11
SM00324     1/1     615   789 ..     1   193 []   223.9  1.4e-62

Alignments of top-scoring domains:
SM00326: domain 1 of 1, from 15 to 73: score 28.5, E = 0.00092
                   *->eyvvAlYDyea.qnedELsFkkGDiitvleksddgWweGelnrtGke
                      +y  + YDye +  +  + +k+G+ +++++k++d+Ww+++ + + k 
     hm00142    15    VYIEVEYDYEYeAKDRKIVIKQGERYILVKKTNDDWWQVKPDENSKA 61   

                   GlfPsnYVeeie<-*
                    ++P+ YV+e++   
     hm00142    62 FYVPAQYVKEVT    73   

SM00456: domain 1 of 2, from 266 to 298: score 29.1, E = 0.00061
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                        ++ We +kd + Gr YYyN  T+e +W +Pr+   
     hm00142   266    QINGEWETHKDSS-GRCYYYNRGTQERTWKPPRW    298  

SM00456: domain 2 of 2, from 312 to 344: score 7.8, E = 9.9
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      p    W ++ d + Gr YYy ++  ++ We P     
     hm00142   312    PGDQEWLKHVDDQ-GRQYYYSADGSRSEWELPKY    344  

SM00233: domain 1 of 1, from 412 to 525: score 52.3, E = 6.2e-11
                   *->vikeGwLlkks........k.swkkryfvLfngvLlyyksk......
                       +k G L + +   ++++ +++w   ++vL +++Ll++k  +++++ 
     hm00142   412    QEKYGLLNVTKiaengkkvRkNWLSSWAVLQGSSLLFTKTQgsstsw 458  

                   ......kpkgsipLsgcsvre.p........cFeivt.dr.tlllqAese
                    +++++kp  +++L+g+++++  +++++++++Fe++t+++++ll+q +++
     hm00142   459 fgsnqsKPEFTVDLKGATIEMaSkdksskknVFELKTrQGtELLIQSDND 508  

                   eereeWvealqsaiaka<-*
                      ++W++ l s i+++   
     hm00142   509 TVINDWFKVLSSTINNQ    525  

SM00324: domain 1 of 1, from 615 to 789: score 223.9, E = 1.4e-62
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      + +P++v  Cie++e++Gld  GIYRvsG+  ++++Lr a +++e+ 
     hm00142   615    GTVPKFVKLCIEHVEEHGLDIDGIYRVSGNLAVIQKLRFAVNHDEKl 661  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                   d           ++d+ ++d+h+++g+LK+++ReLPePL+tf ++ +f++
     hm00142   662 D-----------LNDSKWEDIHVITGALKMFFRELPEPLFTFNHFNDFVN 700  

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   a+k               +++ +r+ a+++l+++LP++n++t++ L++HL
     hm00142   701 AIK---------------QEPRQRVAAVKDLIRQLPKPNQDTMQILFrHL 735  

                   nrVaehsevNkMtarNLAivFgPtLlrpp......ltdikhqnkvvetli
                   +rV+e+ e+N+Mt +  AivFgPtLl p +++++ ++++ +qn++ve ++
     hm00142   736 RRVIENGEKNRMTYQSIAIVFGPTLLKPEketgniAVHTVYQNQIVELIL 785  

                   enad<-*
                    +     
     hm00142   786 LELS    789  

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