hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090202/iprscan-20090202-11423266/chunk_1/iprscan-20090202-11423266.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hm00157 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 308.8 4.8e-99 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 310.5 2.8e-90 1 PF00917.16.fs MATH domain 109.9 2.3e-34 1 PF00917.16.ls MATH domain 111.7 2e-30 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00917.16.fs 1/1 33 155 .. 1 150 [] 109.9 2.3e-34 PF00917.16.ls 1/1 33 155 .. 1 150 [] 111.7 2e-30 PF00443.19.fs 1/1 169 476 .. 1 318 [] 308.8 4.8e-99 PF00443.19.ls 1/1 169 476 .. 1 318 [] 310.5 2.8e-90 Alignments of top-scoring domains: PF00917.16.fs: domain 1 of 1, from 33 to 155: score 109.9, E = 2.3e-34 *->iknfSkikkegesyytspyeerfnipWrllriyrngggs.rhgkflg + fS++ es+ + p + + n+pW+ +++ ++ +++h+k++g hm00157 33 VERFSRLS---ESVLS-PPCFVRNLPWK-IMVMPRFYPDrPHQKSVG 74 lyLhClkeekdsetsenlkWsietefqlklvsdnGksirRmssvtlskki ++L+C+ e++++ +Ws++++++lk+++ + ++ +s++i hm00157 75 FFLQCNAESDST------SWSCHAQAVLKIINYRDDEKS------FSRRI 112 kdainnshtFdkptkgeGwgksGykkFisWddleddyrgylvdDsiiiEa + + +F+k+ +++G+++ F+ W++ +d+ +g+++dD++++E+ hm00157 113 S-----HLFFHKE-NDWGFSN-----FMAWSEVTDPEKGFIDDDKVTFEV 151 eVkI<-* V hm00157 152 FVQA 155 PF00917.16.ls: domain 1 of 1, from 33 to 155: score 111.7, E = 2e-30 *->iknfSkikkegesyytspyeerfnipWrllriyrngggs.rhgkflg + fS++ es+ + p + + n+pW+ +++ ++ +++h+k++g hm00157 33 VERFSRLS---ESVLS-PPCFVRNLPWK-IMVMPRFYPDrPHQKSVG 74 lyLhClkeekdsetsenlkWsietefqlklvsdnGksirRmssvtlskki ++L+C+ e++++ +Ws++++++lk+++ + ++ +s++i hm00157 75 FFLQCNAESDST------SWSCHAQAVLKIINYRDDEKS------FSRRI 112 kdainnshtFdkptkgeGwgksGykkFisWddleddyrgylvdDsiiiEa + + +F+k+ +++G+++ F+ W++ +d+ +g+++dD++++E+ hm00157 113 S-----HLFFHKE-NDWGFSN-----FMAWSEVTDPEKGFIDDDKVTFEV 151 eVkI<-* V hm00157 152 FVQA 155 PF00443.19.fs: domain 1 of 1, from 169 to 476: score 308.8, E = 4.8e-99 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl +g++GL+N+G+TCYmNS+LQ Lf+++ lr +++ +++e + hm00157 169 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-------GD 208 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy +s++s++ al+++f++lq++++++++++ t+++++e ++++ hm00157 209 DSSKSVPLALQRVFYELQHSdKPVGTKKL---------TKSFGWETLDSF 249 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt mQ+D++E++++LLd++++++++ t hm00157 250 MQHDVQELCRVLLDNVENKMKG---------------------------T 272 RF xxxxxxxxxxxxxxxx rnesiitdlFqGqlks.................................. ++e +i +lF+G++ s ++++ + +++++++ + + + +++++ ++ hm00157 273 CVEGTIPKLFRGKMVSyiqckevdyrsdrredyydiqlsikgkknifesf 322 RF xxxxxxxxxxxxxxxxxxxxxxx ...........................klkikrLPpvLiihLKRFsynge + ++ +++++ + ++++ ++ ++++k+ +LPpvL+++L+RF y+ + hm00157 323 vdyvaveqldgdnkydagehglqeaekGVKFLTLPPVLHLQLMRFMYDPQ 372 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeerqrde t++n+Ki+d++efP++L+l++++ hm00157 373 TDQNIKINDRFEFPEQLPLDEFLQK------------------------- 397 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiayikkkk ++ ++p Y L+aV+vHsG ++GHY+ y + k hm00157 398 ---------------TDPKDPANYILHAVLVHSG-DNHGGHYVVYLN-PK 430 RF xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx engkWykfDDekVsevteeevle.............rsssAYiLFY<-* ++gkW+kfDD+ Vs++t+ee e++ ++++++ + + ++AY+L+Y hm00157 431 GDGKWCKFDDDVVSRCTKEEAIEhnygghdddlsvrHCTNAYMLVY 476 PF00443.19.ls: domain 1 of 1, from 169 to 476: score 310.5, E = 2.8e-90 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl +g++GL+N+G+TCYmNS+LQ Lf+++ lr +++ +++e + hm00157 169 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-------GD 208 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy +s++s++ al+++f++lq++++++++++ t+++++e ++++ hm00157 209 DSSKSVPLALQRVFYELQHSdKPVGTKKL---------TKSFGWETLDSF 249 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt mQ+D++E++++LLd++++++++ t hm00157 250 MQHDVQELCRVLLDNVENKMKG---------------------------T 272 RF xxxxxxxxxxxxxxxx rnesiitdlFqGqlks.................................. ++e +i +lF+G++ s ++++ + +++++++ + + + +++++ ++ hm00157 273 CVEGTIPKLFRGKMVSyiqckevdyrsdrredyydiqlsikgkknifesf 322 RF xxxxxxxxxxxxxxxxxxxxxxx ...........................klkikrLPpvLiihLKRFsynge + ++ +++++ + ++++ ++ ++++k+ +LPpvL+++L+RF y+ + hm00157 323 vdyvaveqldgdnkydagehglqeaekGVKFLTLPPVLHLQLMRFMYDPQ 372 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeerqrde t++n+Ki+d++efP++L+l++++ hm00157 373 TDQNIKINDRFEFPEQLPLDEFLQK------------------------- 397 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiayikkkk ++ ++p Y L+aV+vHsG ++GHY+ y + k hm00157 398 ---------------TDPKDPANYILHAVLVHSG-DNHGGHYVVYLN-PK 430 RF xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx engkWykfDDekVsevteeevle.............rsssAYiLFY<-* ++gkW+kfDD+ Vs++t+ee e++ ++++++ + + ++AY+L+Y hm00157 431 GDGKWCKFDDDVVSRCTKEEAIEhnygghdddlsvrHCTNAYMLVY 476 //