hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-03294879/chunk_1/iprscan-20080813-03294879.nocrc
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Query sequence: hm00182
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 185.0    7.3e-51   1
SM00233                                                  27.3     0.0021   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     137   314 ..     1   211 []   185.0  7.3e-51
SM00233     1/1     346   462 ..     1    82 []    27.3   0.0021

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 137 to 314: score 185.0, E = 7.3e-51
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      +++EL q E++ ++dLk++ + +  p++k +      +++++e++++
     hm00182   137    AIFELSQGEEDLIEDLKLAKKAYHDPMLKLS------IMTEQELNQI 177  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   Fg  +++++ +H+++L +L + ++                + s+e +g +
     hm00182   178 FG-TLDSLIPLHEELLSQLRDVRKP---------------DGSTEHVGPI 211  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   ++++   ++ +  Y +Ycsn+  a++ll++   kk+++++q+fl+++ ++
     hm00182   212 LVGW---LPCLSSYDSYCSNQVAAKALLDH---KKQDHRVQDFLQRCLES 255  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   p  r     +l+L+ +L  P  Rl+kYpLLL+e+l+htp d +d+++L++
     hm00182   256 PFSR-----KLDLWNFLDIPRSRLVKYPLLLREILRHTPNDNPDQQHLEE 300  

                   AleaikelasqvNe<-*
                   A+ +i+ + + +N+   
     hm00182   301 AINIIQGIVAEINT    314  

SM00233: domain 1 of 1, from 346 to 462: score 27.3, E = 0.0021
                   *->vikeGwLlkkskswkkryfvLfngvLlyyksk.........kpkgsi
                      v ++G L+       k +++Lf  vL++++  +++++   + ++ +i
     hm00182   346    VCCHGELKNNR--GVKLHVFLFQEVLVITRAVthneqlcyqLYRQPI 390  

                   pLsgcsvre.p......................cFeivt.dr....tlll
                   p++++ +++  +++ + +++ ++  +++++ ++ F+++++++++++t+ l
     hm00182   391 PVKDLLLEDlQdgevrlggslrgafsnneriknFFRVSFkNGsqsqTHSL 440  

                   qAeseeereeWvealqsaiaka<-*
                   qA++   +++W++++++a +     
     hm00182   441 QANDTFNKQQWLNCIRQAKETV    462  

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