hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-03503404/chunk_1/iprscan-20080813-03503404.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf00322 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00005.17.ls ABC transporter 360.2 3.1e-105 2 PF00005.17.fs ABC transporter 356.6 3.7e-104 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00005.17.fs 1/2 986 1166 .. 1 224 [] 211.4 2e-60 PF00005.17.ls 1/2 986 1166 .. 1 224 [] 213.2 5.6e-61 PF00005.17.fs 2/2 1995 2176 .. 1 224 [] 145.3 1.6e-40 PF00005.17.ls 2/2 1995 2176 .. 1 224 [] 147.1 4.5e-41 Alignments of top-scoring domains: PF00005.17.fs: domain 1 of 2, from 986 to 1166: score 211.4, E = 2e-60 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd ++++a++G+NGaGK+T L +l+Gll+ Pt +G++l+ grd pf00322 986 NQITAFLGHNGAGKTTTLSILTGLLP-PT--SGTVLVG------GRD 1023 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkagg.k ++ +++ r+++g+++Q++ lf +lTv+e +++++ k + ++ pf00322 1024 IE----TSLDAVRQSLGMCPQHNILF--HHLTVAEHMLFYAQLKGKSQeE 1067 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ereallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg a+ ++e++Le+ Gl+++++ + pf00322 1068 --------------AQLEMEAMLEDTGLHHKRNE-------------EAQ 1090 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge LSGG++++++ A a++ ++k+++LDEPT+g Dp sr+ +++ll ++r+ pf00322 1091 DLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLKYRS- 1139 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* g+t+++ tH++d++d l dri+++++G pf00322 1140 -GRTIIMSTHHMDEADLLGDRIAIIAQG 1166 PF00005.17.ls: domain 1 of 2, from 986 to 1166: score 213.2, E = 5.6e-61 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd ++++a++G+NGaGK+T L +l+Gll+ Pt +G++l+ grd pf00322 986 NQITAFLGHNGAGKTTTLSILTGLLP-PT--SGTVLVG------GRD 1023 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkagg.k ++ +++ r+++g+++Q++ lf +lTv+e +++++ k + ++ pf00322 1024 IE----TSLDAVRQSLGMCPQHNILF--HHLTVAEHMLFYAQLKGKSQeE 1067 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ereallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg a+ ++e++Le+ Gl+++++ + pf00322 1068 --------------AQLEMEAMLEDTGLHHKRNE-------------EAQ 1090 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge LSGG++++++ A a++ ++k+++LDEPT+g Dp sr+ +++ll ++r+ pf00322 1091 DLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLKYRS- 1139 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* g+t+++ tH++d++d l dri+++++G pf00322 1140 -GRTIIMSTHHMDEADLLGDRIAIIAQG 1166 PF00005.17.fs: domain 2 of 2, from 1995 to 2176: score 145.3, E = 1.6e-40 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Ge +l+G NGaGK+T +k+l+G ++ t +G+ ++ g++ pf00322 1995 GECFGLLGVNGAGKTTTFKMLTGDTT-VT--SGDATVA------GKS 2032 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + +s +++ +gy++Q+ + lT re l pf00322 2033 ILTNISEVHQN----MGYCPQFDAID--ELLTGREHL------------- 2063 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg ++++rl+g+++ee ++ a + ++ +Gl+ ad +g pf00322 2064 -YLYARLRGVpAEEIEKVANWSIKSLGLTVYADC-------------LAG 2099 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge t+SGG k++++ A al+ p+l+lLDEPT+g Dp++r+ l++ + + + pf00322 2100 TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSII-R 2148 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* +g++v+l++H++++ + l++r++++ +G pf00322 2149 EGRAVVLTSHSMEECEALCTRLAIMVKG 2176 PF00005.17.ls: domain 2 of 2, from 1995 to 2176: score 147.1, E = 4.5e-41 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd Ge +l+G NGaGK+T +k+l+G ++ t +G+ ++ g++ pf00322 1995 GECFGLLGVNGAGKTTTFKMLTGDTT-VT--SGDATVA------GKS 2032 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke + +s +++ +gy++Q+ + lT re l pf00322 2033 ILTNISEVHQN----MGYCPQFDAID--ELLTGREHL------------- 2063 RF xxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpg ++++rl+g+++ee ++ a + ++ +Gl+ ad +g pf00322 2064 -YLYARLRGVpAEEIEKVANWSIKSLGLTVYADC-------------LAG 2099 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx tLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrge t+SGG k++++ A al+ p+l+lLDEPT+g Dp++r+ l++ + + + pf00322 2100 TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSII-R 2148 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx qgitvllitHdldlldrladrilvlenG<-* +g++v+l++H++++ + l++r++++ +G pf00322 2149 EGRAVVLTSHSMEECEALCTRLAIMVKG 2176 //