hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-03503404/chunk_1/iprscan-20080813-03503404.nocrc
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Query sequence: pf00322
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  96.1    4.1e-24   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/2     985  1175 ..     1    92 []    58.2    1e-12
SM00382    2/2    1994  2178 ..     1    92 []    37.9  1.4e-06

Alignments of top-scoring domains:
SM00382: domain 1 of 2, from 985 to 1175: score 58.2, E = 1e-12
                   *->pgevvllvGppGsGKTTlaralarllgp..gviyidge.........
                       ++++++ G +G+GKTT++  l +ll+p++g +++ g + + + +  
     pf00322   985    ENQITAFLGHNGAGKTTTLSILTGLLPPtsGTVLVGGRdietsldav 1031 

                   ..................................................
                   +++ +   +++   ++    ++     + +++++++ + + +   ++ + 
     pf00322  1032 rqslgmcpqhnilfhhltvaehmlfyaqlkgksqeeaqlemeamledtgl 1081 

                   ............ggqrirlalalark...dvlllDEitslld........
                   +++++++ ++ +gg++ +l +a+a  ++ +v++lDE+ts  d  ++++  
     pf00322  1082 hhkrneeaqdlsGGMQRKLSVAIAFVgdaKVVILDEPTSGVDpysrrsiw 1131 

                   .........vtviattn.....dldpallrrrfdrrivl.lril<-*
                   +++++ ++++t+i+ t++ ++ dl+++ +++++  r++ ++++l   
     pf00322  1132 dlllkyrsgRTIIMSTHhmdeaDLLGDRIAIIAQGRLYCsGTPL    1175 

SM00382: domain 2 of 2, from 1994 to 2178: score 37.9, E = 1.4e-06
                   *->pgevvllvGppGsGKTTlaralarllgp.........gviyidge..
                      pge+ +l G +G+GKTT+ ++l +    ++++ +  ++ i+ + ++ 
     pf00322  1994    PGECFGLLGVNGAGKTTTFKMLTGDTTVtsgdatvagKSILTNISev 2040 

                   ..................................................
                   +++ +   + +  ++   ++++     + ++   ++ ++  + + ++ + 
     pf00322  2041 hqnmgycpqfdaidelltgrehlylyarlrgvpaeeiekvanwsikslgl 2090 

                   ............ggqrirlalalark...dvlllDEitslld........
                       +   +  +gg + +l  a+a  + ++++llDE+t+  d + ++ + 
     pf00322  2091 tvyadclagtysGGNKRKLSTAIALIgcpPLVLLDEPTTGMDpqarrmlw 2140 

                   ..........vtviattndldpallrrrfdrrivllril<-*
                   +   +  ++++ v++t++ +++   +++ +  i+++  +   
     pf00322  2141 nvivsiiregRAVVLTSH-SMEECEALCTRLAIMVKGAF    2178 

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