hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-03503404/chunk_1/iprscan-20080813-03503404.nocrc
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Query sequence: pf00322
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
TIGR01257   rim_protein: rim ABC transporter           6995.0          0   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
TIGR01257     1/1      31  2302 ..     1  2272 []  6995.0        0

Alignments of top-scoring domains:
TIGR01257: domain 1 of 1, from 31 to 2302: score 6995.0, E = 0
                   *->mGFvRqiqLLLWKnWtLRKRqKiRFvvELvWPLsLFLvLiWLRnanP
                      mGFvRqiqLLLWKnWtLRKRqKiRFvvELvWPLsLFLvLiWLRnanP
     pf00322    31    MGFVRQIQLLLWKNWTLRKRQKIRFVVELVWPLSLFLVLIWLRNANP 77   

                   LYskHECHFPnKAmPsAGlLPWLqGiFCnvnnPCFqsPtpGEsPGivsnY
                   LYs+HECHFPnKAmPsAG+LPWLqGiFCnvnnPCFqsPtpGEsPGivsnY
     pf00322    78 LYSHHECHFPNKAMPSAGMLPWLQGIFCNVNNPCFQSPTPGESPGIVSNY 127  

                   nnsiLARvYRDFqELlmdaPEsqHLGqvWaELrtLsqlmdtLRtHPERiA
                   nnsiLARvYRDFqELlm+aPEsqHLG++W+EL++Lsq+mdtLRtHPERiA
     pf00322   128 NNSILARVYRDFQELLMNAPESQHLGRIWTELHILSQFMDTLRTHPERIA 177  

                   GRGiriRdiLKDeEaLtLFLvkniGLsDsvvyLLvnsqvRpEqFArGvPD
                   GRGiriRdiLKDeE+LtLFL+kniGLsDsvvyLL+nsqvRpEqFA+GvPD
     pf00322   178 GRGIRIRDILKDEETLTLFLIKNIGLSDSVVYLLINSQVRPEQFAHGVPD 227  

                   LeLkDiACsEALLeRFiiFsqRRgAqtvRdaLCsLsqgtLqWiEDtLYAn
                   L+LkDiACsEALLeRFiiFsqRRgA+tvR+aLCsLsqgtLqWiEDtLYAn
     pf00322   228 LALKDIACSEALLERFIIFSQRRGAKTVRYALCSLSQGTLQWIEDTLYAN 277  

                   vDFFKLFhvlPtLLDsrsqGinLRsWGgiLsDlsPRiqeFiHRPsvqDLL
                   vDFFKLF+vlPtLLDsrsqGinLRsWGgiLsD+sPRiqeFiHRPs+qDLL
     pf00322   278 VDFFKLFRVLPTLLDSRSQGINLRSWGGILSDMSPRIQEFIHRPSMQDLL 327  

                   WvtRPLlqnGGPEtFtqLmgiLsDLLCGYPEGGGsRvlsFnWYEDnnYKA
                   WvtRPL+qnGGPEtFt+LmgiLsDLLCGYPEGGGsRvlsFnWYEDnnYKA
     pf00322   328 WVTRPLMQNGGPETFTKLMGILSDLLCGYPEGGGSRVLSFNWYEDNNYKA 377  

                   FLGiDstRKDPiYsYDkRttsFCnaLiqsLEsnPLtKiAWRAAKPLLmGK
                   FLGiDstRKDPiYsYD+RttsFCnaLiqsLEsnPLtKiAWRAAKPLLmGK
     pf00322   378 FLGIDSTRKDPIYSYDRRTTSFCNALIQSLESNPLTKIAWRAAKPLLMGK 427  

                   iLftPDsPAaRRilKnAnstFEELervRKLvKaWEEvGPqiWYFFdkstq
                   iL+tPDsPAaRRilKnAnstFEELe+vRKLvKaWEEvGPqiWYFFd+stq
     pf00322   428 ILYTPDSPAARRILKNANSTFEELEHVRKLVKAWEEVGPQIWYFFDNSTQ 477  

                   msviRDtLenPtvKdFlnRqLGEEGitaEAvLnFlynGPrEkqADDmanF
                   m++iRDtL+nPtvKdFlnRqLGEEGitaEA+LnFly+GPrE+qADDmanF
     pf00322   478 MNMIRDTLGNPTVKDFLNRQLGEEGITAEAILNFLYKGPRESQADDMANF 527  

                   dWRDiFnitDRaLRLanqYLECLvLDKFEsYdDEvqLtqRALsLLEEnrF
                   dWRDiFnitDR+LRL+nqYLECLvLDKFEsY+DE+qLtqRALsLLEEn+F
     pf00322   528 DWRDIFNITDRTLRLVNQYLECLVLDKFESYNDETQLTQRALSLLEENMF 577  

                   WAGvvFPdmyPWtssLPPHvKYKiRmDiDvvEKtnKiKDRYWDsGPRADP
                   WAGvvFPdmyPWtssLPPHvKYKiRmDiDvvEKtnKiKDRYWDsGPRADP
     pf00322   578 WAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADP 627  

                   vEDFRYiWGGFAYLqDmvEqGitrsqvqaEaPvGiYLqqmPYPCFvDDsF
                   vEDFRYiWGGFAYLqDmvEqGitrsqvqaEaPvGiYLqqmPYPCFvDDsF
     pf00322   628 VEDFRYIWGGFAYLQDMVEQGITRSQVQAEAPVGIYLQQMPYPCFVDDSF 677  

                   miiLnRCFPiFmvLAWiYsvsmtvKsivLEKELRLKEtLKnqGvsnaviW
                   miiLnRCFPiFmvLAWiYsvsmtvKsivLEKELRLKEtLKnqGvsnaviW
     pf00322   678 MIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIW 727  

                   CtWFLDsFsimslsifLLtiFimHGRiLHYsdPFiLFLFLLAFstAtimq
                   CtWFLDsFsims+sifLLtiFimHGRiLHYsdPFiLFLFLLAFstAtim+
     pf00322   728 CTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDPFILFLFLLAFSTATIML 777  

                   cFLLstlFskAsLAAACsGviYFtLYLPHiLCFAWqDRmtAdlKkavsLL
                   cFLLst+FskAsLAAACsGviYFtLYLPHiLCFAWqDRmtA+lKkavsLL
     pf00322   778 CFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAELKKAVSLL 827  

                   spvAFGFGtEYLvrFEEqGlGLqWsniGnsPlEGDEFsFLlsmkmmLLDA
                   spvAFGFGtEYLvrFEEqGlGLqWsniGnsP+EGDEFsFLlsm+mmLLDA
     pf00322   828 SPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPTEGDEFSFLLSMQMMLLDA 877  

                   AlYGLLAWYLDqvFPGDYGtPLPWYFLLqEsYWLGGEGCstREERALEKt
                   A+YGLLAWYLDqvFPGDYGtPLPWYFLLqEsYWLGGEGCstREERALEKt
     pf00322   878 AVYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREERALEKT 927  

                   EPltEEmEDPEhPEGinDsFFERElPGlvPGvCvKnLvKiFEPsGRPAvD
                   EPltEE+EDPEhPEGi+DsFFERE+PG+vPGvCvKnLvKiFEP+G PAvD
     pf00322   928 EPLTEETEDPEHPEGIHDSFFEREHPGWVPGVCVKNLVKIFEPCGQPAVD 977  

                   RLnitFYEnqitAFLGHnGAGKtttLsiltGLLPPtsGtvLvGGkDiEtn
                   RLnitFYEnqitAFLGHnGAGKtttLsiltGLLPPtsGtvLvGG+DiEt+
     pf00322   978 RLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGRDIETS 1027 

                   LDavRqsLGmCPqHniLFHHLtvAEHiLFYAqLKGrsweEAqLEmEAmLE
                   LDavRqsLGmCPqHniLFHHLtvAEH+LFYAqLKG+s+eEAqLEmEAmLE
     pf00322  1028 LDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLE 1077 

                   DtGLHHKRnEEAqDLsGGmqRKLsvAiAFvGDaKvvvLDEPtsGvDPYsR
                   DtGLHHKRnEEAqDLsGGmqRKLsvAiAFvGDaKvv+LDEPtsGvDPYsR
     pf00322  1078 DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSR 1127 

                   RsiWDLLLKYRsGRtiimstHHmDEADlLGDRiAiisqGRLYCsGtPLFL
                   RsiWDLLLKYRsGRtiimstHHmDEADlLGDRiAii+qGRLYCsGtPLFL
     pf00322  1128 RSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFL 1177 

                   KnCFGtGlYLtLvRkmKniqsqrkGsEgtCsCasKGFstrCParvdeitp
                   KnCFGtGlYLtLvRkmKniqsqrkGsEgtCsC+sKGFst+CPa+vd++tp
     pf00322  1178 KNCFGTGLYLTLVRKMKNIQSQRKGSEGTCSCSSKGFSTTCPAHVDDLTP 1227 

                   EqvLDGDvnELmDlvyHHvPEAKLvECiGqELiFLLPnKnFKqRAYAsLF
                   EqvLDGDvnELmD+v+HHvPEAKLvECiGqELiFLLPnKnFK+RAYAsLF
     pf00322  1228 EQVLDGDVNELMDVVLHHVPEAKLVECIGQELIFLLPNKNFKHRAYASLF 1277 

                   RELEEtLADLGLssFGisDtPLEEiFLKvtEDadsGslFaGGaqqKREnv
                   RELEEtLADLGLssFGisDtPLEEiFLKvtED+dsG+lFaGGaqqKREnv
     pf00322  1278 RELEETLADLGLSSFGISDTPLEEIFLKVTEDSDSGPLFAGGAQQKRENV 1327 

                   nlRHPCsgPsEKagqtpqasnscsPGePaahPeGqPpPEpEdPgsrlntG
                   n+RHPC+gP+EKagqtpq+sn+csPG+PaahPeGqPpPEpE+Pg++lntG
     pf00322  1328 NPRHPCLGPREKAGQTPQDSNVCSPGAPAAHPEGQPPPEPECPGPQLNTG 1377 

                   arLilqHvqALLvKRFqHtiRshKDFlAqivLPAtFvFLALmLsiiiPPF
                   ++L+lqHvqALLvKRFqHtiRshKDFlAqivLPAtFvFLALmLsi+iPPF
     pf00322  1378 TQLVLQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLALMLSIVIPPF 1427 

                   GEyPALtLHPWmYGqqYtFFsmDePdsEqlevLADvLlnkPGFGnRCLKE
                   GEyPALtLHPW+YGqqYtFFsmDeP+sEq++vLADvLlnkPGFGnRCLKE
     pf00322  1428 GEYPALTLHPWIYGQQYTFFSMDEPGSEQFTVLADVLLNKPGFGNRCLKE 1477 

                   eWLPEyPCgnstpWKtPsvsPnithLlqkqKWtaaqPsPsCrCstREKLt
                   +WLPEyPCgnstpWKtPsvsPnit+L+qkqKWt+++PsPsCrCstREKLt
     pf00322  1478 GWLPEYPCGNSTPWKTPSVSPNITQLFQKQKWTQVNPSPSCRCSTREKLT 1527 

                   mLPECPEGAGGLPPPqRtqRstEiLqDLtdRnisDfLvKtYPALiRssLK
                   mLPECPEGAGGLPPPqRtqRstEiLqDLtdRnisDfLvKtYPALiRssLK
     pf00322  1528 MLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVKTYPALIRSSLK 1577 

                   sKFWvnEqRYGGisiGGKLPavPitGEALvGFLsdLGqlmnvsGGPvtRE
                   sKFWvnEqRYGGisiGGKLP+vPitGEALvGFLsdLG++mnvsGGP+tRE
     pf00322  1578 SKFWVNEQRYGGISIGGKLPVVPITGEALVGFLSDLGRIMNVSGGPITRE 1627 

                   AsKEmpdFLKhLEteDniKvWFnnKGWHALvsFLnvAHnAiLRAsLpkDr
                   AsKE+pdFLKhLEteDniKvWFnnKGWHALvsFLnvAHnAiLRAsLpkDr
     pf00322  1628 ASKEIPDFLKHLETEDNIKVWFNNKGWHALVSFLNVAHNAILRASLPKDR 1677 

                   dPEEYGitvisqPLnLtKEqLseitvLttsvDAvvAiCviFamsFvPAsF
                   +PEEYGitvisqPLnLtKEqLseitvLttsvDAvvAiCviF+msFvPAsF
     pf00322  1678 SPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFSMSFVPASF 1727 

                   vLYLiqERvnKaKHLqFisGvsPttYWltnFLWDimnYavsAgLvvGiFi
                   vLYLiqERvnK+KHLqFisGvsPttYW+tnFLWDimnY+vsAgLvvGiFi
     pf00322  1728 VLYLIQERVNKSKHLQFISGVSPTTYWVTNFLWDIMNYSVSAGLVVGIFI 1777 

                   GFqKKAYtspenLPALvaLLlLYGWAviPmmYPAsFLFdvPstAYvALsC
                   GFqKKAYtspenLPALvaLLlLYGWAviPmmYPAsFLFdvPstAYvALsC
     pf00322  1778 GFQKKAYTSPENLPALVALLLLYGWAVIPMMYPASFLFDVPSTAYVALSC 1827 

                   AnLFiGinssAitFvLELFEnnRtLLRfnAmLRKLLivFPHFCLGRGLiD
                   AnLFiGinssAitF+LELFEnnRtLLRfnA+LRKLLivFPHFCLGRGLiD
     pf00322  1828 ANLFIGINSSAITFILELFENNRTLLRFNAVLRKLLIVFPHFCLGRGLID 1877 

                   LALsqAvtDvYAqFGEehsanPFqWDLiGKnLvAmavEGvvYFLLtLLiq
                   LALsqAvtDvYA+FGEehsanPF+WDLiGKnL+Am+vEGvvYFLLtLL+q
     pf00322  1878 LALSQAVTDVYARFGEEHSANPFHWDLIGKNLFAMVVEGVVYFLLTLLVQ 1927 

                   rhFFlsrWiaEPakEPivDEDDDvAEERqRiisGGnKtDiLrLnELtKvY
                   rhFFls+WiaEP+kEPivDEDDDvAEERqRii+GGnKtDiLrL+ELtK+Y
     pf00322  1928 RHFFLSQWIAEPTKEPIVDEDDDVAEERQRIITGGNKTDILRLHELTKIY 1977 

                   sGtssPAvDRLCvGvRPGECFGLLGvnGAGKtttFKmLtGDttvtsGDAt
                   +GtssPAvDRLCvGvRPGECFGLLGvnGAGKtttFKmLtGDttvtsGDAt
     pf00322  1978 PGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 2027 

                   vAGKsiLtnisdvHqnmGYCPqFDAiDdLLtGREHLYLYARLRGvPaeEi
                   vAGKsiLtnis+vHqnmGYCPqFDAiD+LLtGREHLYLYARLRGvPaeEi
     pf00322  2028 VAGKSILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEI 2077 

                   EkvanWsiqsLGLslYADrLAGtYsGGnKRKLstAiALiGCPPLvLLDEP
                   EkvanWsi+sLGL++YAD+LAGtYsGGnKRKLstAiALiGCPPLvLLDEP
     pf00322  2078 EKVANWSIKSLGLTVYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEP 2127 

                   ttGmDPqARRmLWntivsiiREgRAvvLtsHsmEECEALCtRLAimvKGa
                   ttGmDPqARRmLWn+ivsiiREgRAvvLtsHsmEECEALCtRLAimvKGa
     pf00322  2128 TTGMDPQARRMLWNVIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGA 2177 

                   FqClGtiqHLKsKFGDGYivtmKiksPKDDLLPDLnPvEqFFqGnFPGsv
                   F+C+GtiqHLKsKFGDGYivtmKiksPKDDLLPDLnPvEqFFqGnFPGsv
     pf00322  2178 FRCMGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSV 2227 

                   qRERHynmLqFqvssssLARiFqLLvsHKDsLLiEEYsvtqttLDqvFvn
                   qRERHynmLqFqvssssLARiFqLL+sHKDsLLiEEYsvtqttLDqvFvn
     pf00322  2228 QRERHYNMLQFQVSSSSLARIFQLLLSHKDSLLIEEYSVTQTTLDQVFVN 2277 

                   FAKqqtEtyDLPLHPRaAGAsrqAk<-*
                   FAKqqtE++DLPLHPRaAGAsrqA+   
     pf00322  2278 FAKQQTESHDLPLHPRAAGASRQAQ    2302 

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