hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-03581873/chunk_1/iprscan-20080813-03581873.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf00482 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 798.9 2.8e-237 13 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 778.0 5.3e-231 13 PF09045.1.ls L27_2 133.4 5.6e-37 1 PF09045.1.fs L27_2 131.4 2.2e-36 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF09045.1.fs 1/1 10 67 .. 1 58 [] 131.4 2.2e-36 PF09045.1.ls 1/1 10 67 .. 1 58 [] 133.4 5.6e-37 PF00595.14.ls 1/13 141 225 .. 1 86 [] 68.6 1.8e-17 PF00595.14.fs 1/13 141 225 .. 1 86 [] 66.6 4.5e-18 PF00595.14.ls 2/13 261 338 .. 1 86 [] 57.5 4.1e-14 PF00595.14.fs 2/13 261 338 .. 1 86 [] 55.5 5.9e-15 PF00595.14.ls 3/13 381 464 .. 1 86 [] 67.9 2.9e-17 PF00595.14.fs 3/13 381 464 .. 1 86 [] 66.0 6.9e-18 PF00595.14.ls 4/13 559 635 .. 1 86 [] 20.3 0.0059 PF00595.14.ls 5/13 704 788 .. 1 86 [] 68.1 2.6e-17 PF00595.14.fs 5/13 704 788 .. 1 86 [] 66.1 6.3e-18 PF00595.14.ls 6/13 1012 1093 .. 1 86 [] 50.4 5.7e-12 PF00595.14.fs 6/13 1012 1080 .. 1 75 [. 52.5 4.2e-14 PF00595.14.ls 7/13 1155 1244 .. 1 86 [] 72.4 1.3e-18 PF00595.14.fs 7/13 1155 1244 .. 1 86 [] 70.5 3.8e-19 PF00595.14.fs 8/13 1354 1434 .. 1 86 [] 41.8 4.4e-11 PF00595.14.ls 8/13 1354 1434 .. 1 86 [] 43.8 5.5e-10 PF00595.14.fs 9/13 1487 1565 .. 1 86 [] 41.6 4.8e-11 PF00595.14.ls 9/13 1487 1565 .. 1 86 [] 43.6 6.3e-10 PF00595.14.ls 10/13 1633 1713 .. 1 86 [] 68.8 1.6e-17 PF00595.14.fs 10/13 1633 1713 .. 1 86 [] 66.9 3.9e-18 PF00595.14.ls 11/13 1729 1811 .. 1 86 [] 70.1 6.5e-18 PF00595.14.fs 11/13 1729 1797 .. 1 74 [. 68.3 1.5e-18 PF00595.14.fs 12/13 1837 1920 .. 1 86 [] 64.5 1.8e-17 PF00595.14.ls 12/13 1837 1920 .. 1 86 [] 66.5 8.2e-17 PF00595.14.fs 13/13 1962 2044 .. 1 86 [] 98.9 3.8e-27 PF00595.14.ls 13/13 1962 2044 .. 1 86 [] 100.9 3.6e-27 Alignments of top-scoring domains: PF09045.1.fs: domain 1 of 1, from 10 to 67: score 131.4, E = 2.2e-36 *->dkqraLQaleRLqgkLkErGdvtqeeKLSllksvLqSPLFnQILtLQ dk+raL a+eRLq kL+ErGdv++e+KLSllksvLqSPLF+QIL+LQ pf00482 10 DKNRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLFSQILSLQ 56 kSiqqLkdQvn<-* +S+qqLkdQvn pf00482 57 TSVQQLKDQVN 67 PF09045.1.ls: domain 1 of 1, from 10 to 67: score 133.4, E = 5.6e-37 *->dkqraLQaleRLqgkLkErGdvtqeeKLSllksvLqSPLFnQILtLQ dk+raL a+eRLq kL+ErGdv++e+KLSllksvLqSPLF+QIL+LQ pf00482 10 DKNRALHAAERLQTKLRERGDVANEDKLSLLKSVLQSPLFSQILSLQ 56 kSiqqLkdQvn<-* +S+qqLkdQvn pf00482 57 TSVQQLKDQVN 67 PF00595.14.ls: domain 1 of 13, from 141 to 225: score 68.6, E = 1.8e-17 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr l k+ gglGfs++g ++ +++ gifv e+++G + A+++Gr pf00482 141 VFELLKP-PSGGLGFSVVGLRSENRgELGIFVQEIQEG-SVAHRDGR 185 LqaGDqIlsvNGqdlenl.sheeavlalkgsggsevtLtvl<-* L++ DqIl++NGq l +h +a+ +l+++++ +v+L+++ pf00482 186 LKETDQILAINGQALDQTiTHQQAISILQKAKD-TVQLVIA 225 PF00595.14.fs: domain 1 of 13, from 141 to 225: score 66.6, E = 4.5e-18 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr l k+ gglGfs++g ++ +++ gifv e+++G + A+++Gr pf00482 141 VFELLKP-PSGGLGFSVVGLRSENRgELGIFVQEIQEG-SVAHRDGR 185 LqaGDqIlsvNGqdlenl.sheeavlalkgsggsevtLtvl<-* L++ DqIl++NGq l +h +a+ +l+++++ +v+L+++ pf00482 186 LKETDQILAINGQALDQTiTHQQAISILQKAKD-TVQLVIA 225 PF00595.14.ls: domain 2 of 13, from 261 to 338: score 57.5, E = 4.1e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ l ++glGf i gg++ +g++v+ +lpG g A++ GrL pf00482 261 TIELVN--DGSGLGFGIIGGKA----TGVIVKTILPG-GVADQHGRL 300 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + GD Il+++++dl+++s e+++++l+++g+ v+L ++ pf00482 301 CSGDHILKIGDTDLAGMSSEQVAQVLRQCGN-RVKLMIA 338 PF00595.14.fs: domain 2 of 13, from 261 to 338: score 55.5, E = 5.9e-15 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ l ++glGf i gg++ +g++v+ +lpG g A++ GrL pf00482 261 TIELVN--DGSGLGFGIIGGKA----TGVIVKTILPG-GVADQHGRL 300 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + GD Il+++++dl+++s e+++++l+++g+ v+L ++ pf00482 301 CSGDHILKIGDTDLAGMSSEQVAQVLRQCGN-RVKLMIA 338 PF00595.14.ls: domain 3 of 13, from 381 to 464: score 67.9, E = 2.9e-17 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG +v l k +glG++i+g +++ + gifv+++ + +a e +G pf00482 381 DVELTK--NVQGLGITIAGYIGDKKlePSGIFVKSITKS-SAVEHDG 424 rLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* r+q+GDqI++v+G++l +++ +av++l+ +g+ +v Lt++ pf00482 425 RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ-TVLLTLM 464 PF00595.14.fs: domain 3 of 13, from 381 to 464: score 66.0, E = 6.9e-18 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG +v l k +glG++i+g +++ + gifv+++ + +a e +G pf00482 381 DVELTK--NVQGLGITIAGYIGDKKlePSGIFVKSITKS-SAVEHDG 424 rLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* r+q+GDqI++v+G++l +++ +av++l+ +g+ +v Lt++ pf00482 425 RIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ-TVLLTLM 464 PF00595.14.ls: domain 4 of 13, from 559 to 635: score 20.3, E = 0.0059 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v+++ +++glG+s+ + + f+ +vlp g+ +G+L pf00482 559 HVSKFS--ENSGLGISLEATVG-----HHFIRSVLPE-GPVGHSGKL 597 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* GD +l+vNG l + h ++v +lk+ + evt++ pf00482 598 FSGDELLEVNGITLLGENHQDVVNILKELPI-EVTMVCC 635 PF00595.14.ls: domain 5 of 13, from 704 to 788: score 68.1, E = 2.6e-17 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG + lek + glGfsi +d + + + i++ +++pG g Ae++G pf00482 704 HIELEK--GSKGLGFSILDYQDPIDpaSTVIIIRSLVPG-GIAEKDG 747 rLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* rL +GD+++ vN+++len s+eeav+alkg+++++v++ v+ pf00482 748 RLLPGDRLMFVNDVNLENSSLEEAVEALKGAPSGTVRIGVA 788 PF00595.14.fs: domain 5 of 13, from 704 to 788: score 66.1, E = 6.3e-18 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG + lek + glGfsi +d + + + i++ +++pG g Ae++G pf00482 704 HIELEK--GSKGLGFSILDYQDPIDpaSTVIIIRSLVPG-GIAEKDG 747 rLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* rL +GD+++ vN+++len s+eeav+alkg+++++v++ v+ pf00482 748 RLLPGDRLMFVNDVNLENSSLEEAVEALKGAPSGTVRIGVA 788 PF00595.14.ls: domain 6 of 13, from 1012 to 1093: score 50.4, E = 5.7e-12 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ + k ++++lG++++ ++d+ g++v ++++G ga+ ++Gr+ pf00482 1012 TINIAK--GNSSLGMTVSANKDG---LGMIVRSIIHG-GAISRDGRI 1052 qaGDqIlsvNGqdlenlsheeavlalkgsgg..sevtLtvl<-* +GD Ils+N +++ +++ ++a ++l++ + + +++t pf00482 1053 AIGDCILSINEESTISVTNAQARAMLRRHSLigPDIKITYV 1093 PF00595.14.fs: domain 6 of 13, from 1012 to 1080: score 52.5, E = 4.2e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ + k ++++lG++++ ++d+ g++v ++++G ga+ ++Gr+ pf00482 1012 TINIAK--GNSSLGMTVSANKDG---LGMIVRSIIHG-GAISRDGRI 1052 qaGDqIlsvNGqdlenlsheeavlalkg<-* +GD Ils+N +++ +++ ++a ++l++ pf00482 1053 AIGDCILSINEESTISVTNAQARAMLRR 1080 PF00595.14.ls: domain 7 of 13, from 1155 to 1244: score 72.4, E = 1.3e-18 *->evtlekedkrgglGfsikggsdkga.......dkgifvsevlpGsga v l +e +lG+si+gg + g++ ++++ +gif+++vl++ ++ pf00482 1155 RVELWRE-PSKSLGISIVGGRGMGSrlsngevMRGIFIKHVLED-SP 1199 AeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* A + G L++GD+I++v+G dl++ she+av+a++++g+ +v v+ pf00482 1200 AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQ 1244 PF00595.14.fs: domain 7 of 13, from 1155 to 1244: score 70.5, E = 3.8e-19 *->evtlekedkrgglGfsikggsdkga.......dkgifvsevlpGsga v l +e +lG+si+gg + g++ ++++ +gif+++vl++ ++ pf00482 1155 RVELWRE-PSKSLGISIVGGRGMGSrlsngevMRGIFIKHVLED-SP 1199 AeagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* A + G L++GD+I++v+G dl++ she+av+a++++g+ +v v+ pf00482 1200 AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGN-PVVFMVQ 1244 PF00595.14.fs: domain 8 of 13, from 1354 to 1434: score 41.8, E = 4.4e-11 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL + lek +++glG+s++g++d + +++f+ + p+ gaA ++GrL pf00482 1354 MIELEK--GHSGLGLSLAGNKDRS-RMSVFIVGIDPN-GAAGKDGRL 1396 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* q+ D +l++NGq l + sh a ++k +++ +v++ + pf00482 1397 QIADELLEINGQILYGRSHQNASSIIKCAPS-KVKIIFI 1434 PF00595.14.ls: domain 8 of 13, from 1354 to 1434: score 43.8, E = 5.5e-10 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL + lek +++glG+s++g++d + +++f+ + p+ gaA ++GrL pf00482 1354 MIELEK--GHSGLGLSLAGNKDRS-RMSVFIVGIDPN-GAAGKDGRL 1396 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* q+ D +l++NGq l + sh a ++k +++ +v++ + pf00482 1397 QIADELLEINGQILYGRSHQNASSIIKCAPS-KVKIIFI 1434 PF00595.14.fs: domain 9 of 13, from 1487 to 1565: score 41.6, E = 4.8e-11 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL + l+k +gglG+ i++++ + g++++++ + g A+ +GrL pf00482 1487 HLELPK--DQGGLGIAISEEDTLS---GVIIKSLTEH-GVAATDGRL 1527 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GDqIl+v+++ +++ + e+ + +lk ++ +v+Lt+ pf00482 1528 KVGDQILAVDDEIVVGYPIEKFISLLKTAKM-TVKLTIH 1565 PF00595.14.ls: domain 9 of 13, from 1487 to 1565: score 43.6, E = 6.3e-10 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL + l+k +gglG+ i++++ + g++++++ + g A+ +GrL pf00482 1487 HLELPK--DQGGLGIAISEEDTLS---GVIIKSLTEH-GVAATDGRL 1527 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GDqIl+v+++ +++ + e+ + +lk ++ +v+Lt+ pf00482 1528 KVGDQILAVDDEIVVGYPIEKFISLLKTAKM-TVKLTIH 1565 PF00595.14.ls: domain 10 of 13, from 1633 to 1713: score 68.8, E = 1.6e-17 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ ++k +r glG+si+ggsd + i++ ev + gaA ++GrL pf00482 1633 TIEISK--GRTGLGLSIVGGSDTL-LGAIIIHEVYEE-GAACKDGRL 1675 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* aGDqIl+vNG dl++ +h+ea+ +l+++++ v+Lt+ pf00482 1676 WAGDQILEVNGIDLRKATHDEAINVLRQTPQ-RVRLTLY 1713 PF00595.14.fs: domain 10 of 13, from 1633 to 1713: score 66.9, E = 3.9e-18 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ ++k +r glG+si+ggsd + i++ ev + gaA ++GrL pf00482 1633 TIEISK--GRTGLGLSIVGGSDTL-LGAIIIHEVYEE-GAACKDGRL 1675 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* aGDqIl+vNG dl++ +h+ea+ +l+++++ v+Lt+ pf00482 1676 WAGDQILEVNGIDLRKATHDEAINVLRQTPQ-RVRLTLY 1713 PF00595.14.ls: domain 11 of 13, from 1729 to 1811: score 70.1, E = 6.5e-18 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ l+k + glG+si+g ++ +g+fvs++++G g A+a+GrL pf00482 1729 TIELQKK-PGKGLGLSIVGKRND---TGVFVSDIVKG-GIADADGRL 1770 qaGDqIlsvNGqdlenlsheeavlalkgsgg..sevtLtvl<-* GDqIl vNG+d++n ++e ++++lk s g+ s+ t + pf00482 1771 MQGDQILMVNGEDVRNATQEAVAALLKVSEGslSSFTFPLS 1811 PF00595.14.fs: domain 11 of 13, from 1729 to 1797: score 68.3, E = 1.5e-18 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++ l+k + glG+si+g ++ +g+fvs++++G g A+a+GrL pf00482 1729 TIELQKK-PGKGLGLSIVGKRND---TGVFVSDIVKG-GIADADGRL 1770 qaGDqIlsvNGqdlenlsheeavlalk<-* GDqIl vNG+d++n ++e ++++lk pf00482 1771 MQGDQILMVNGEDVRNATQEAVAALLK 1797 PF00595.14.fs: domain 12 of 13, from 1837 to 1920: score 64.5, E = 1.8e-17 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr +v ++k+ +lG+si+gg + + +d +if++ + p aA+ ++ pf00482 1837 TVEMKKG-PTDSLGISIAGGVGSPLgDVPIFIAMMHPTGVAAQTQK- 1881 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L++GD+I+ ++G+++e+++h +av +lk+++g ++ + v pf00482 1882 LRVGDRIVTICGTSTEGMTHTQAVNLLKNASG-SIEMQVV 1920 PF00595.14.ls: domain 12 of 13, from 1837 to 1920: score 66.5, E = 8.2e-17 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr +v ++k+ +lG+si+gg + + +d +if++ + p aA+ ++ pf00482 1837 TVEMKKG-PTDSLGISIAGGVGSPLgDVPIFIAMMHPTGVAAQTQK- 1881 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L++GD+I+ ++G+++e+++h +av +lk+++g ++ + v pf00482 1882 LRVGDRIVTICGTSTEGMTHTQAVNLLKNASG-SIEMQVV 1920 PF00595.14.fs: domain 13 of 13, from 1962 to 2044: score 98.9, E = 3.8e-27 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr ++tle+ ++ glGfsi+gg + +++d +i+v+ v + gaA +Gr pf00482 1962 SITLER--GPDGLGFSIVGGYGSPHgDLPIYVKTVFAK-GAASEDGR 2005 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L+ GDqI++vNGq+le+++heeav++lk+++g +vtL vl pf00482 2006 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVL 2044 PF00595.14.ls: domain 13 of 13, from 1962 to 2044: score 100.9, E = 3.6e-27 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr ++tle+ ++ glGfsi+gg + +++d +i+v+ v + gaA +Gr pf00482 1962 SITLER--GPDGLGFSIVGGYGSPHgDLPIYVKTVFAK-GAASEDGR 2005 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L+ GDqI++vNGq+le+++heeav++lk+++g +vtL vl pf00482 2006 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVL 2044 //