hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-03581873/chunk_1/iprscan-20080813-03581873.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf00482 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00228 1021.7 9.5e-303 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00228 1/13 150 228 .. 1 80 [] 92.5 5.1e-23 SM00228 2/13 269 341 .. 1 80 [] 84.6 1.2e-20 SM00228 3/13 389 467 .. 1 80 [] 89.6 3.6e-22 SM00228 4/13 567 638 .. 1 80 [] 72.1 7e-17 SM00228 5/13 712 791 .. 1 80 [] 79.1 5.3e-19 SM00228 6/13 1020 1096 .. 1 80 [] 54.9 1e-11 SM00228 7/13 1164 1247 .. 1 80 [] 89.9 3.1e-22 SM00228 8/13 1362 1437 .. 1 80 [] 76.5 3.3e-18 SM00228 9/13 1495 1568 .. 1 80 [] 61.7 9.1e-14 SM00228 10/13 1641 1716 .. 1 80 [] 89.4 4.2e-22 SM00228 11/13 1738 1814 .. 1 80 [] 69.5 4.2e-16 SM00228 12/13 1846 1923 .. 1 80 [] 76.6 3.1e-18 SM00228 13/13 1970 2045 .] 1 80 [] 85.3 7.5e-21 Alignments of top-scoring domains: SM00228: domain 1 of 13, from 150 to 228: score 92.5, E = 5.1e-23 *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv gglGfs+vg +++++++ gifv ++++Gs+A+++Gr Lk+ D+ pf00482 150 GGLGFSVVGlrsenrgelGIFVQEIQEGSVAHRDGR-----LKETDQ 191 IleVNGetsve.gltheeavdllkkaggggvGekvtLtvlRgg<-* Il++NG + ++++ th++a+ +l+ka++ +v+L++ Rg+ pf00482 192 ILAING-QALDqTITHQQAISILQKAKD-----TVQLVIARGS 228 SM00228: domain 2 of 13, from 269 to 341: score 84.6, E = 1.2e-20 *->gglGfsivg....gifvssvvpGspAakaGrkslglLkvGDvIleVN glGf i g++ +g++v+ ++pG++A+++Gr L+ GD+Il++ pf00482 269 SGLGFGIIGgkatGVIVKTILPGGVADQHGR-----LCSGDHILKIG 310 GetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* + t++ g++ e+++++l+++g+ +v+L++ Rg pf00482 311 D-TDLAGMSSEQVAQVLRQCGN-----RVKLMIARGA 341 SM00228: domain 3 of 13, from 389 to 467: score 89.6, E = 3.6e-22 *->gglGfsivg..........gifvssvvpGspAakaGrkslglLkvGD +glG++i+g ++++ +++gifv+s+ + s+ +++Gr +++GD pf00482 389 QGLGITIAGyigdkklepsGIFVKSITKSSAVEHDGR-----IQIGD 430 vIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +I++V+G t+++g+t ++av++l+ +g+ +v Lt+ R+g pf00482 431 QIIAVDG-TNLQGFTNQQAVEVLRHTGQ-----TVLLTLMRRG 467 SM00228: domain 4 of 13, from 567 to 638: score 72.1, E = 7e-17 *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG glG+s+ + +++f+ sv+p +p ++G+ L GD++leVNG pf00482 567 SGLGISLEAtvgHHFIRSVLPEGPVGHSGK-----LFSGDELLEVNG 608 etsvegltheeavdllkkaggggvGekvtLtvlRgg<-* + + g h+++v++lk+ + +vt++ +R+ pf00482 609 -ITLLGENHQDVVNILKELPI-----EVTMVCCRRT 638 SM00228: domain 5 of 13, from 712 to 791: score 79.1, E = 5.3e-19 *->gglGfsivg..........gifvssvvpGspAakaGrkslglLkvGD +glGfsi + +++ ++ ++ i++ s+vpG+ A+k+Gr L +GD pf00482 712 KGLGFSILDyqdpidpastVIIIRSLVPGGIAEKDGR-----LLPGD 753 vIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +++ VN+ +++e+ + eeav++lk+a+ g +v++ v ++ pf00482 754 RLMFVND-VNLENSSLEEAVEALKGAPSG----TVRIGVAKPL 791 SM00228: domain 6 of 13, from 1020 to 1096: score 54.9, E = 1e-11 *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV +lG +++ ++++ g +v s+++G++ +++Gr + +GD Il++ pf00482 1020 SSLGMTVSAnkdglGMIVRSIIHGGAISRDGR-----IAIGDCILSI 1061 NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* N +s+ ++t ++a ++l++ + +G +++t ++ + pf00482 1062 NE-ESTISVTNAQARAMLRRHSL--IGPDIKITYVPAE 1096 SM00228: domain 7 of 13, from 1164 to 1247: score 89.9, E = 3.1e-22 *->gglGfsivg...............gifvssvvpGspAakaGrkslgl ++lG+sivg+++ +++ ++++ +gif+++v+++spA k G+ pf00482 1164 KSLGISIVGgrgmgsrlsngevmrGIFIKHVLEDSPAGKNGT----- 1205 LkvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<- Lk+GD+I+eV+G +++++++he+av++++kag+ +v+++v+ pf00482 1206 LKPGDRIVEVDG-MDLRDASHEQAVEAIRKAGN-----PVVFMVQSII 1247 * pf00482 - - SM00228: domain 8 of 13, from 1362 to 1437: score 76.5, E = 3.3e-18 *->gglGfsivg.......gifvssvvpGspAakaGrkslglLkvGDvIl glG+s++g++++++ +f++++ p+++A k+Gr L++ D++l pf00482 1362 SGLGLSLAGnkdrsrmSVFIVGIDPNGAAGKDGR-----LQIADELL 1403 eVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* e+NG + + g +h+ a ++k+a+ kv+++ +R++ pf00482 1404 EING-QILYGRSHQNASSIIKCAPS-----KVKIIFIRNK 1437 SM00228: domain 9 of 13, from 1495 to 1568: score 61.7, E = 9.1e-14 *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV gglG+ i+++++ +g++++s+ + ++Aa +Gr LkvGD+Il+V pf00482 1495 GGLGIAISEedtlsGVIIKSLTEHGVAATDGR-----LKVGDQILAV 1536 NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* ++ + v g + e + llk a +v+Lt+ ++ pf00482 1537 DD-EIVVGYPIEKFISLLKTA-----KMTVKLTIHAEN 1568 SM00228: domain 10 of 13, from 1641 to 1716: score 89.4, E = 4.2e-22 *->gglGfsivg.......gifvssvvpGspAakaGrkslglLkvGDvIl glG+sivg++++ + i++ +v++ ++A k+Gr L +GD+Il pf00482 1641 TGLGLSIVGgsdtllgAIIIHEVYEEGAACKDGR-----LWAGDQIL 1682 eVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* eVNG ++++ +th+ea+++l+++++ +v+Lt+ R++ pf00482 1683 EVNG-IDLRKATHDEAINVLRQTPQ-----RVRLTLYRDE 1716 SM00228: domain 11 of 13, from 1738 to 1814: score 69.5, E = 4.2e-16 *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV +glG+sivg+++++g+fvs++v+G+ A+ +Gr L GD+Il V pf00482 1738 KGLGLSIVGkrndtGVFVSDIVKGGIADADGR-----LMQGDQILMV 1779 NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* NG ++v+++t+e +++llk + g+ ++ t+ + + pf00482 1780 NG-EDVRNATQEAVAALLKVSEGSL--SSFTFPLSGSS 1814 SM00228: domain 12 of 13, from 1846 to 1923: score 76.6, E = 3.1e-18 *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv +lG+si+g+ +++ ++ +if++ p ++Aa+ + L+vGD+ pf00482 1846 DSLGISIAGgvgsplgdvPIFIAMMHPTGVAAQTQK-----LRVGDR 1887 IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* I+ + G ts+eg+th +av+llk+a+g ++++ v+ gg pf00482 1888 IVTICG-TSTEGMTHTQAVNLLKNASG-----SIEMQVVAGG 1923 SM00228: domain 13 of 13, from 1970 to 2045: score 85.3, E = 7.5e-21 *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv glGfsivg+ ++++++ +i+v+ v++ ++A+ +Gr Lk GD+ pf00482 1970 DGLGFSIVGgygsphgdlPIYVKTVFAKGAASEDGR-----LKRGDQ 2011 IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* I++VNG +s+eg+theeav++lk+++g +vtL+vl pf00482 2012 IIAVNG-QSLEGVTHEEAVAILKRTKG-----TVTLMVLS-- 2045 //