hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-04055369/chunk_1/iprscan-20080813-04055369.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf00494 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00102.17.ls Protein-tyrosine phosphatase 376.2 4.7e-110 1 PF00102.17.fs Protein-tyrosine phosphatase 374.4 1.6e-109 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 303.1 4.7e-88 5 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 293.2 4.5e-85 5 PF00373.8.fs FERM domain (Band 4.1 family) 125.8 3.5e-39 2 PF00373.8.ls FERM domain (Band 4.1 family) 120.7 3.8e-33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00373.8.ls 1/1 542 749 .. 1 210 [] 120.7 3.8e-33 PF00373.8.fs 2/2 623 749 .. 76 210 .] 120.5 1.6e-37 PF00595.14.fs 1/5 1042 1125 .. 1 86 [] 77.2 4.8e-21 PF00595.14.ls 1/5 1042 1125 .. 1 86 [] 79.2 1.2e-20 PF00595.14.ls 2/5 1317 1399 .. 1 86 [] 81.3 2.9e-21 PF00595.14.fs 2/5 1317 1399 .. 1 86 [] 79.3 1.2e-21 PF00595.14.ls 3/5 1450 1535 .. 1 86 [] 43.3 7.7e-10 PF00595.14.fs 3/5 1450 1535 .. 1 86 [] 41.3 6e-11 PF00595.14.fs 4/5 1737 1815 .. 1 86 [] 78.4 2.2e-21 PF00595.14.ls 4/5 1737 1815 .. 1 86 [] 80.3 5.5e-21 PF00595.14.ls 5/5 1832 1912 .. 1 86 [] 19.1 0.0076 PF00102.17.ls 1/1 2186 2415 .. 1 275 [] 376.2 4.7e-110 PF00102.17.fs 1/1 2186 2415 .. 1 275 [] 374.4 1.6e-109 Alignments of top-scoring domains: PF00373.8.ls: domain 1 of 1, from 542 to 749: score 120.7, E = 3.8e-33 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd +++ ll + e+ + k+ ++ +d+V+ h+gl E F L+ l pf00494 542 VNIMLLNGQRLELTCDTKTICKDVFDMVVAHIGLVEHHLFALATL-- 586 DnsskdsptWLdpsKkirkQdvk....keeP.........ytLhFRvKFY + + dp+ k++k +++ keeP+++++ + + tL+FR KF+ pf00494 587 ---KDNEYFFVDPDLKLTKV--ApegwKEEPkkktkatvnFTLFFRIKFF 631 peDvpneLrqe.iTrylffLQvkqdIleGrlpCpfetAvLLASYaVQsef D + L+q + T ++++LQ+++dIle+r C et+ LLAS a Q+e+ pf00494 632 MDD--VSLIQHtLTCHQYYLQLRKDILEERMHCDDETSLLLASLALQAEY 679 GDYneslHkaGRtCLCYLsdekllPqRVlnqkqltkddfEekIaelHkeH GDY +++H+++ Y e+ lP RV++ +l e+ +lH + pf00494 680 GDYQPEVHGVS-----YFRMEHYLPARVME--KLDLSYIKEELPKLHNTY 722 rGmspdeAeleYLkiArdLemYGVdff<-* G s+ e ele+Lk ++L YGV f+ pf00494 723 VGASEKETELEFLKVCQRLTEYGVHFH 749 PF00373.8.fs: domain 2 of 2, from 623 to 749: score 120.5, E = 1.6e-37 *->tLhFRvKFYpeDvpneLrqe.iTrylffLQvkqdIleGrlpCpfetA tL+FR KF+ D + L+q + T ++++LQ+++dIle+r C et+ pf00494 623 TLFFRIKFFMDD--VSLIQHtLTCHQYYLQLRKDILEERMHCDDETS 667 vLLASYaVQsefGDYneslHkaGRtCLCYLsdekllPqRVlnqkqltkdd LLAS a Q+e+GDY +++H+++ Y e+ lP RV++ +l pf00494 668 LLLASLALQAEYGDYQPEVHGVS-----YFRMEHYLPARVME--KLDLSY 710 fEekIaelHkeHrGmspdeAeleYLkiArdLemYGVdff<-* e+ +lH + G s+ e ele+Lk ++L YGV f+ pf00494 711 IKEELPKLHNTYVGASEKETELEFLKVCQRLTEYGVHFH 749 PF00595.14.fs: domain 1 of 5, from 1042 to 1125: score 77.2, E = 4.8e-21 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr +v l+k+ glGf+i gg++ g+ d gif+s+v pG g+A+ +G pf00494 1042 LVNLKKD-AKYGLGFQIIGGEKMGRlDLGIFISSVAPG-GPADLDGC 1086 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L++GD+++svN ++le++sh a+++l+++++ vtL++ pf00494 1087 LKPGDRLISVNSVSLEGVSHHAAIEILQNAPE-DVTLVIS 1125 PF00595.14.ls: domain 1 of 5, from 1042 to 1125: score 79.2, E = 1.2e-20 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr +v l+k+ glGf+i gg++ g+ d gif+s+v pG g+A+ +G pf00494 1042 LVNLKKD-AKYGLGFQIIGGEKMGRlDLGIFISSVAPG-GPADLDGC 1086 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L++GD+++svN ++le++sh a+++l+++++ vtL++ pf00494 1087 LKPGDRLISVNSVSLEGVSHHAAIEILQNAPE-DVTLVIS 1125 PF00595.14.ls: domain 2 of 5, from 1317 to 1399: score 81.3, E = 2.9e-21 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr ev l k ++lG+s+ gg + + + gi+v+ v+p gaAe +Gr pf00494 1317 EVELAK--NDNSLGISVTGGVNTSVrHGGIYVKAVIPQ-GAAESDGR 1360 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +++GD++l+vNG++le+ +h +av+ l+++g+ +v+L+++ pf00494 1361 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ-VVHLLLE 1399 PF00595.14.fs: domain 2 of 5, from 1317 to 1399: score 79.3, E = 1.2e-21 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr ev l k ++lG+s+ gg + + + gi+v+ v+p gaAe +Gr pf00494 1317 EVELAK--NDNSLGISVTGGVNTSVrHGGIYVKAVIPQ-GAAESDGR 1360 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +++GD++l+vNG++le+ +h +av+ l+++g+ +v+L+++ pf00494 1361 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ-VVHLLLE 1399 PF00595.14.ls: domain 3 of 5, from 1450 to 1535: score 43.3, E = 7.7e-10 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea ev+l+k +glGfs +++++ ++++ ++ + v+++ pG +aAe pf00494 1450 EVKLFK--NSSGLGFSFSREDNLIPeqinASIVRVKKLFPGQPAAES 1494 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* g+ + +GD+Il+vNG +l +ls+ e++ al+g+ ev L++ pf00494 1495 GK-IDVGDVILKVNGASLKGLSQQEVISALRGTAP-EVFLLLC 1535 PF00595.14.fs: domain 3 of 5, from 1450 to 1535: score 41.3, E = 6e-11 *->evtlekedkrgglGfsikggsdkga....dkgifvsevlpGsgaAea ev+l+k +glGfs +++++ ++++ ++ + v+++ pG +aAe pf00494 1450 EVKLFK--NSSGLGFSFSREDNLIPeqinASIVRVKKLFPGQPAAES 1494 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* g+ + +GD+Il+vNG +l +ls+ e++ al+g+ ev L++ pf00494 1495 GK-IDVGDVILKVNGASLKGLSQQEVISALRGTAP-EVFLLLC 1535 PF00595.14.fs: domain 4 of 5, from 1737 to 1815: score 78.4, E = 2.2e-21 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++tl k+ + g+lGf++ g+ + g++v +v+++ +A+ +GrL pf00494 1737 LITLIKS-EKGSLGFTVTKGNQRI---GCYVHDVIQD--PAKSDGRL 1777 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD++++vN++d++n++h +av +l+ +++ +v+L++ pf00494 1778 KPGDRLIKVNDTDVTNMTHTDAVNLLRAASK-TVRLVIG 1815 PF00595.14.ls: domain 4 of 5, from 1737 to 1815: score 80.3, E = 5.5e-21 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++tl k+ + g+lGf++ g+ + g++v +v+++ +A+ +GrL pf00494 1737 LITLIKS-EKGSLGFTVTKGNQRI---GCYVHDVIQD--PAKSDGRL 1777 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD++++vN++d++n++h +av +l+ +++ +v+L++ pf00494 1778 KPGDRLIKVNDTDVTNMTHTDAVNLLRAASK-TVRLVIG 1815 PF00595.14.ls: domain 5 of 5, from 1832 to 1912: score 19.1, E = 0.0076 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++tl + lGfs+ gg d + +++s+++p s aA g+ L pf00494 1832 DITLTC--NKEELGFSLCGGHDSL-YQVVYISDINPRSVAAIEGN-L 1874 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* q D+I vNG+++ ++++ee+ al +s ++ L+ pf00494 1875 QLLDVIHYVNGVSTQGMTLEEVNRALDMSLP-SLVLKAT 1912 PF00102.17.ls: domain 1 of 1, from 2186 to 2415: score 376.2, E = 4.7e-110 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv N++KNRyk+ilpyD tRV L + ++YINAs+i++p v pf00494 2186 NRRKNRYKNILPYDATRVPLG-----DEGGYINASFIKIP------V 2221 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC +k+++ yIa+QgPlp T++DFW+M+weqk+tvI+M+t++vE+++ +K C pf00494 2222 GKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEK--IK-C 2268 aqYWPeeskeggsltyG.ditVtlvseekeadytvRtleltn.gdgskin ++YWP+ g +++ ++++ lv+++++++++vR ++l++ ++ pf00494 2269 QRYWPN--ILGKTTMVSnRLRLALVRMQQLKGFVVRAMTLEDiQT----- 2311 akqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvel +e+r + h+ +t+WPDh++P+ p++ll ++ ++r+ ++ pf00494 2312 ------REVRHISHLNFTAWPDHDTPSQ-PDDLLTFISYMRHIHR----- 2349 gerspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidv sg Pi+ HCSAG+GR+Gt+i+id++l ++ ++ ++ d+ pf00494 2350 ------SG-------PIITHCSAGIGRSGTLICIDVVLGLISQDLDF-DI 2385 fdiVkelRsqRpgmVQteeQYiFlydaile<-* d+V+++R qR+gmVQte+QYiF+y++il+ pf00494 2386 SDLVRCMRLQRHGMVQTEDQYIFCYQVILY 2415 PF00102.17.fs: domain 1 of 1, from 2186 to 2415: score 374.4, E = 1.6e-109 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv N++KNRyk+ilpyD tRV L + ++YINAs+i++p v pf00494 2186 NRRKNRYKNILPYDATRVPLG-----DEGGYINASFIKIP------V 2221 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC +k+++ yIa+QgPlp T++DFW+M+weqk+tvI+M+t++vE+++ +K C pf00494 2222 GKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEK--IK-C 2268 aqYWPeeskeggsltyG.ditVtlvseekeadytvRtleltn.gdgskin ++YWP+ g +++ ++++ lv+++++++++vR ++l++ ++ pf00494 2269 QRYWPN--ILGKTTMVSnRLRLALVRMQQLKGFVVRAMTLEDiQT----- 2311 akqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvel +e+r + h+ +t+WPDh++P+ p++ll ++ ++r+ ++ pf00494 2312 ------REVRHISHLNFTAWPDHDTPSQ-PDDLLTFISYMRHIHR----- 2349 gerspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidv sg Pi+ HCSAG+GR+Gt+i+id++l ++ ++ ++ d+ pf00494 2350 ------SG-------PIITHCSAGIGRSGTLICIDVVLGLISQDLDF-DI 2385 fdiVkelRsqRpgmVQteeQYiFlydaile<-* d+V+++R qR+gmVQte+QYiF+y++il+ pf00494 2386 SDLVRCMRLQRHGMVQTEDQYIFCYQVILY 2415 //