hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-04055369/chunk_1/iprscan-20080813-04055369.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf00494 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00194 394.4 6.5e-114 1 SM00228 380.7 8.8e-110 5 SM00295 223.0 2.7e-62 1 SM00750 185.9 3.8e-51 1 SM00404 145.8 4.5e-39 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00750 1/1 1 158 [. 1 242 [] 185.9 3.8e-51 SM00295 1/1 536 749 .. 1 232 [] 223.0 2.7e-62 SM00228 1/5 1051 1128 .. 1 80 [] 90.5 2e-22 SM00228 2/5 1325 1402 .. 1 80 [] 88.8 6.7e-22 SM00228 3/5 1458 1538 .. 1 80 [] 65.3 7.8e-15 SM00228 4/5 1746 1818 .. 1 80 [] 83.5 2.5e-20 SM00228 5/5 1840 1915 .. 1 80 [] 52.6 5.1e-11 SM00194 1/1 2161 2418 .. 1 308 [] 394.4 6.5e-114 SM00404 1/1 2316 2415 .. 1 92 [] 145.8 4.5e-39 Alignments of top-scoring domains: SM00750: domain 1 of 1, from 1 to 158: score 185.9, E = 3.8e-51 *->vSLaeiLevrgrPLsEeEaWAVclqcarsLrevarkaslaaadiegr +e +rk+sla+++++g+ pf00494 1 ------------------------------QELFRKVSLADPAALGF 17 vrltadlllvredGsVsfqepasstpKEqepderafvpPelaqgqsetdl ++++++lll++ +GsVsf+++++s ++d+raf++Pe++q+qs+t+l pf00494 18 IISPWSLLLLP-SGSVSFTDENIS-----NQDLRAFTAPEVLQNQSLTSL 61 sdsSSGDSSvinRAFDnSnHHHHHqHHHPPLvvSeeahvysLGavlyaAl sd+ e++h+ysLG++ly+++ pf00494 62 SDV-------------------------------EKIHIYSLGMTLYWGA 80 dYglpeneeleLsqpLeslllrMaaddpedrcelesieeaceekedeeae dY++p++++++L+++L+s+ll+M++d++++r++++++++ac pf00494 81 DYEVPQSQPIKLGDHLNSILLGMCEDVIYARVSVRTVLDAC--------- 121 eerravrsleeamkvCrasrllqrreasnhylAvcralfeetlel<-* s+++++++C a+++++++++++++l++++++++ ++++ pf00494 122 -------SAHIRNSNC-APSFSYVKHLVKLVLGNLSGTDQLSCNS 158 SM00295: domain 1 of 1, from 536 to 749: score 223.0, E = 2.7e-62 *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey r++++ ll+g+ le+++d +t++++++++v+ ++gl +e+++ pf00494 536 EDNRRKVNIMLLNGQRLELTCDTKTICKDVFDMVVAHIGL--VEHHL 580 FgLqfedkded..............shWldpaktilkqdvkspksepltl F+L+ ++e+ +++ + ++ + W + +k+ +k+ v+ +tl pf00494 581 FALATLKDNEYffvdpdlkltkvapEGWKEEPKKKTKATVN------FTL 624 yFRvkFyppdwhgppeqlkeDptrynllylQvrddilsGrlpcpseeeal +FR+kF+ +d +++++++ t++ ++ylQ+r+dil++r +c +e++l pf00494 625 FFRIKFFMDD----VSLIQHTLTCH-QYYLQLRKDILEERMHCD-DETSL 668 lLAaLalqaefGdydpeeeekkkslkhvakelslkrflPkqlldsikasf lLA+Lalqae+Gdy+pe h + +++ +++lP ++++ ++ s pf00494 669 LLASLALQAEYGDYQPE--------VHGVSYFRMEHYLPARVMEKLDLS- 709 lqiqltlkewrerIvelhkehaglspeeaklkYLelarrLpptYGvelF< +++e + +lh+ ++g s+ e +l++L++++rL+ +YGv+++ pf00494 710 --------YIKEELPKLHNTYVGASEKETELEFLKVCQRLT-EYGVHFH 749 -* pf00494 - - SM00228: domain 1 of 5, from 1051 to 1128: score 90.5, E = 2e-22 *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv glGf+i g+++ ++ + gif+ssv pG+pA+ +G +Lk+GD+ pf00494 1051 YGLGFQIIGgekmgrldlGIFISSVAPGGPADLDG-----CLKPGDR 1092 IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +++VN +s+eg++h a+++l++a++ vtL++ ++ pf00494 1093 LISVNS-VSLEGVSHHAAIEILQNAPE-----DVTLVISQPK 1128 SM00228: domain 2 of 5, from 1325 to 1402: score 88.8, E = 6.7e-22 *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv ++lG+s++g+ +++ +++gi+v+ v+p ++A+ +Gr +++GD+ pf00494 1325 NSLGISVTGgvntsvrhgGIYVKAVIPQGAAESDGR-----IHKGDR 1366 IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +l+VNG +s+eg+th +av+ l+++g+ +v+L++++g pf00494 1367 VLAVNG-VSLEGATHKQAVETLRNTGQ-----VVHLLLEKGQ 1402 SM00228: domain 3 of 5, from 1458 to 1538: score 65.3, E = 7.8e-15 *->gglGfsivg............gifvssvvpGspAakaGrkslglLkv glGfs + +++ +++ + + + v++++pG pAa +G+ + v pf00494 1458 SGLGFSFSRednlipeqinasIVRVKKLFPGQPAAESGK-----IDV 1499 GDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* GDvIl+VNG s++gl+++e++ +l+++ + +v L+++R++ pf00494 1500 GDVILKVNG-ASLKGLSQQEVISALRGTAP-----EVFLLLCRPP 1538 SM00228: domain 4 of 5, from 1746 to 1818: score 83.5, E = 2.5e-20 *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV g+lGf+++ ++++ g++v +v+ + pA +Gr Lk+GD++++V pf00494 1746 GSLGFTVTKgnqriGCYVHDVIQD-PAKSDGR-----LKPGDRLIKV 1786 NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* N+ t+v+++th +av+ll++a++ +v+L++ R pf00494 1787 ND-TDVTNMTHTDAVNLLRAASK-----TVRLVIGRVL 1818 SM00228: domain 5 of 5, from 1840 to 1915: score 52.6, E = 5.1e-11 *->gglGfsivg.......gifvssvvpGspAakaGrkslglLkvGDvIl + lGfs+ g++++ + +++s++ p s+Aa G+ L+ DvI pf00494 1840 EELGFSLCGghdslyqVVYISDINPRSVAAIEGN-----LQLLDVIH 1881 eVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* VNG +s++g+t ee+ ++l + + +++L+ R++ pf00494 1882 YVNG-VSTQGMTLEEVNRALDMSLP-----SLVLKATRND 1915 SM00194: domain 1 of 1, from 2161 to 2418: score 394.4, E = 6.5e-114 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi ++E e+lq+l+p d +c +++ +eNr +KNRYk +i pf00494 2161 IPSKELENLQELKPLD---------QCLIGQTKENR--RKNRYK-NI 2195 lpyDhtRVkLkppdgesdseegsDYINAnyidgy..kepkayIaTQGPLp lpyD tRV L ++ ++YINA++i+++ +ke++ yIa+QGPLp pf00494 2196 LPYDATRVPLGDE---------GGYINASFIKIPvgKEEFVYIACQGPLP 2236 sTveDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee... Tv DFW+M+weqk++vI+M+t++vE+ ++KC++YWP+ ++ pf00494 2237 TTVGDFWQMIWEQKSTVIAMMTQEVEG--------EKIKCQRYWPNIlgk 2278 .sltyGditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVth ++++ ++++ lv+ ++l+ ++++R +++++ +t e+r + h pf00494 2279 tTMVSNRLRLALVRMQQLK-GFVVRAMTLEDIQT--------REVRHISH 2319 yhytnWPDhgvPespkslldfvrlvrksqssspnssenivssnskyagts +++t+WPDh++P+ p++ll f+ ++r+ ++ pf00494 2320 LNFTAWPDHDTPSQPDDLLTFISYMRHIHR-------------------- 2349 psgPivVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpg sgPi+ HCSAG+GR+GT+i+id++l ++ ++ ++di d+V+ +R qR+g pf00494 2350 -SGPIITHCSAGIGRSGTLICIDVVLGLISQdldFDISDLVRCMRLQRHG 2398 mVQTeeQYiFlyraileylk<-* mVQTe+QYiF+y++il++l pf00494 2399 MVQTEDQYIFCYQVILYVLT 2418 SM00404: domain 1 of 1, from 2316 to 2415: score 145.8, E = 4.5e-39 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.....PivVHC + h+ +t+WpDh +P+++d++l+f+ ++r+ ++++Pi+ HC pf00494 2316 HISHLNFTAWPDH-----DTPSqpDDLLTFISYMRHihrsgPIITHC 2357 SAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQYl SAG+GR+Gt+++id++l + +++ ++di d+v+ +R qR+gmvqte+QY+ pf00494 2358 SAGIGRSGTLICIDVVLGLisqdldFDISDLVRCMRLQRHGMVQTEDQYI 2407 Flyralle<-* F+y+++l+ pf00494 2408 FCYQVILY 2415 //