hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-04134188/chunk_1/iprscan-20080813-04134188.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf00527 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00150 1355.2 0 17 SM00033 215.9 3.5e-60 2 SM00233 64.9 1e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00033 1/2 60 160 .. 1 100 [] 106.5 3.1e-27 SM00033 2/2 179 277 .. 1 100 [] 109.4 4e-28 SM00150 1/17 309 415 .. 1 104 [] 3.7 4 SM00150 2/17 429 529 .. 1 104 [] 93.1 3.2e-23 SM00150 3/17 535 638 .. 1 104 [] 87.6 1.5e-21 SM00150 4/17 644 744 .. 1 104 [] 112.3 5.4e-29 SM00150 5/17 750 849 .. 1 104 [] 83.3 3e-20 SM00150 6/17 855 955 .. 1 104 [] 92.1 6.6e-23 SM00150 7/17 961 1062 .. 1 104 [] 91.4 1.1e-22 SM00150 8/17 1068 1169 .. 1 104 [] 92.9 3.8e-23 SM00150 9/17 1175 1275 .. 1 104 [] 72.8 4.3e-17 SM00150 10/17 1281 1380 .. 1 104 [] 81.7 9.2e-20 SM00150 11/17 1386 1479 .. 1 104 [] 55.8 5.4e-12 SM00150 12/17 1485 1585 .. 1 104 [] 92.6 4.7e-23 SM00150 13/17 1591 1691 .. 1 104 [] 91.5 1e-22 SM00150 14/17 1697 1798 .. 1 104 [] 93.8 2e-23 SM00150 15/17 1804 1904 .. 1 104 [] 68.4 8.8e-16 SM00150 16/17 1910 2010 .. 1 104 [] 98.8 6.2e-25 SM00150 17/17 2016 2258 .. 1 104 [] 43.4 3e-08 SM00233 1/1 2183 2294 .. 1 82 [] 64.9 1e-14 Alignments of top-scoring domains: SM00033: domain 1 of 2, from 60 to 160: score 106.5, E = 3.1e-27 *->eeeallrWinsll.....kvtnfssdlkDGvvLckLlnslsPagsvd +++++++W+ns+l + + ++t++++dl+DG+ L+kLl++ls + + pf00527 60 QKKTFTKWVNSHLarvscRITDLYKDLRDGRMLIKLLEVLSG-EMLP 105 kkk....rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkk k ++++ r+++leN+ al+f++++ + +++ +++D+v+g n++ pf00527 106 KPTkgkmRIHCLENVDKALQFLKEQ-----RVHLENMGSHDIVDG--NHR 148 lilgviwtLirl<-* l+lg+iwt+i++ pf00527 149 LVLGLIWTIILR 160 SM00033: domain 2 of 2, from 179 to 277: score 109.4, E = 4e-28 *->eeeallrWinsll......kvtnfssdlkDGvvLckLlnslsPagsv +++all W++ ++ + ++ +vtnf+s++kDG+++++L+++++P +++ pf00527 179 AKDALLLWCQMKTagyphvNVTNFTSSWKDGLAFNALIHKHRP-DLI 224 dkkk..rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkkl d++k + ++++ N+++a+++ae++ +g+ +l+dpeD++ +++ pf00527 225 DFDKlkDSNARHNLEHAFNVAERQ-----LGIIPLLDPEDVFTE---NPD 266 ilgviwtLirl<-* ++++i++++++ pf00527 267 EKSIITYVVAF 277 SM00150: domain 1 of 17, from 309 to 415: score 3.7, E = 4 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +++ a +l+ W+e + ++l+s ++ ++l++v+++l+ + + ++ pf00527 309 EKYSGLASDLLTWIEQTITVLNSRKFA--NSLTGVQQQLQAFSTYRT 353 elaaheervdalnelgeqLiee.sghpdaeeIeerl.............. e ++ e++ + +I+ r++ ++++ ++++++ pf00527 354 ------------VEKPPKFQEKgNLEVLLFTIQSRMrannqkvytphdgk 391 ..eelnerWeeLlelaeeRrqkLe<-* ++n++We+L+e+ +R+ +L pf00527 392 lvSDINRAWESLEEAEYRRELALR 415 SM00150: domain 2 of 17, from 429 to 529: score 93.1, E = 3.2e-23 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F r+a+ e Wl+e ++l++++++g Dl++vea kkH+a+e+ pf00527 429 RRFDRKAAMRETWLSENQRLVAQDNFG--YDLAAVEAAKKKHEAIET 473 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae + aa+eerv al++l+++L +e + +d + I +r +++ + W L+el++ pf00527 474 DTAAYEERVRALEDLAQELEKE-NYHDQKRITARKDNILRLWSYLQELLQ 522 eRrqkLe<-* Rrq+Le pf00527 523 SRRQRLE 529 SM00150: domain 3 of 17, from 535 to 638: score 87.6, E = 1.5e-21 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q++++d+ ++W++e ++ l s ++g k+l +ve+ll+kH+ ea pf00527 535 QKLFQDMLHSIDWMDEIKAHLLSAEFG--KHLLEVEDLLQKHKLMEA 579 elaaheervdalnelgeqLiee..sghpdaeeIeerleelnerWeeLlel ++a ++++v+a++++ ++ e +++++ d + I++r+ +l++ +eeL ++ pf00527 580 DIAIQGDKVKAITAATLKFTEGkgYQPCDPQVIQDRISHLEQCFEELSNM 629 aeeRrqkLe<-* a+ R+++Le pf00527 630 AAGRKAQLE 638 SM00150: domain 4 of 17, from 644 to 744: score 112.3, E = 5.4e-29 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F++++de+e+W++ekeq+ ss d+g kDl+sv l++kH+a+e+ pf00527 644 WKFFWEMDEAESWIKEKEQIYSSLDYG--KDLTSVLILQRKHKAFED 688 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae el + ++++ +++ ++++ + + ++Ie+r++e+ ++W++L++la+ pf00527 689 ELRGLDAHLEQIFQEAHGMVAR-KQFGHPQIEARIKEVSAQWDQLKDLAA 737 eRrqkLe<-* ++ L+ pf00527 738 FCKKNLQ 744 SM00150: domain 5 of 17, from 750 to 849: score 83.3, E = 3e-20 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +qF+ dad+l+aWl+++ +lls ed+g +D+ + +al kkH+++ + pf00527 750 FQFQGDADDLKAWLQDAHRLLSGEDVG--QDEGATRALGKKHKDFLE 794 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae el++ + +++l+++++ + ee d++++ rl++l+e ++++ ++a+ pf00527 795 ELEESRGVMEHLEQQAQGFPEE--FRDSPDVTHRLQALRELYQQVVAQAD 842 eRrqkLe<-* R+q+L+ pf00527 843 LRQQRLQ 849 SM00150: domain 6 of 17, from 855 to 955: score 92.1, E = 6.6e-23 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea + + + d e W++eke++l+ ++++ ++le++e+ +++++ l++ pf00527 855 YTVFGETDACELWMGEKEKWLAEMEMP--DTLEDLEVVQHRFDILDQ 899 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e+++ ++d +n +++ L+e+ ghp + e+++ +++ln+rW++ + l+ pf00527 900 EMKTLMTQIDGVNLAANSLVES-GHPRSREVKQYQDHLNTRWQAFQTLVS 948 eRrqkLe<-* eRr++ + pf00527 949 ERREAVD 955 SM00150: domain 7 of 17, from 961 to 1062: score 91.4, E = 1.1e-22 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale + + d++e+ +W+++k +++ s++dlg +Dl+++ a ++k+ le pf00527 961 HNYCVDCEETSKWITDKTkVVESTKDLG--RDLAGIIAIQRKLSGLE 1005 aelaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela +++aa ++rvdal+++ +qL+++ +++++e+I +r+++l+e W+ L++ + pf00527 1006 RDVAAIQARVDALERESQQLMDS-HPEQKEDIGQRQKHLEELWQGLQQSL 1054 eeRrqkLe<-* + ++ L pf00527 1055 QGQEDLLG 1062 SM00150: domain 8 of 17, from 1068 to 1169: score 92.9, E = 3.8e-23 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q Fl+d+d++ aWl+ ++++++sed++ +l+++e+ll++H +++ pf00527 1068 QAFLQDLDDFQAWLSITQKAVASEDMP--ESLPEAEQLLQQHAGIKD 1112 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e++ h+++++ ++e ge+ i+ + +p+ + +rle l++ W++L +++e pf00527 1113 EIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRLEGLDTGWNALGRMWE 1162 eRrqkLe<-* R + L pf00527 1163 SRSHTLA 1169 SM00150: domain 9 of 17, from 1175 to 1275: score 72.8, E = 4.3e-17 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+F++da+++ea l+++e l++ +++ ++le++ea ++k++++ pf00527 1175 QEFQKDAKQAEAILSNQEYTLAHLEPP--DSLEAAEAGIRKFEDFLG 1219 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae +++++++v + + g++L++e g+ +++I+e+++ +++r ++ e+a+ pf00527 1220 SMENNRDKVLSPVDSGNKLVAE-GNLYSDKIKEKVQLIEDRHRKNNEKAQ 1268 eRrqkLe<-* e L pf00527 1269 EASVLLR 1275 SM00150: domain 10 of 17, from 1281 to 1380: score 81.7, E = 9.2e-20 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q Fl++++el W+++k l+s+d+ ++ ++ +++ kHqa+ a pf00527 1281 QNFLQNCQELTLWINDKL--LTSQDVS-YDEARNLHNKWLKHQAFVA 1324 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ela he +++++++g+qL++e ++ + + ++le+l++ W+eL++ ++ pf00527 1325 ELASHEGWLENIDAEGKQLMDE-KPQFTALVSQKLEALHRLWDELQATTK 1373 eRrqkLe<-* e+ q+L pf00527 1374 EKTQHLS 1380 SM00150: domain 11 of 17, from 1386 to 1479: score 55.8, E = 5.4e-12 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea l+ ++l +W++ +e +l s+d+g kDl+sv+++l k+++ e+ pf00527 1386 DLRLQTHADLNKWISAMEDQLRSDDPG--KDLTSVNRMLAKLKRVED 1430 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ++ ++e++ +l ++ + ee g+++ +Ie+ r+ +Lle + pf00527 1431 QVNVRKEELGELFAQVPSMGEE-GGDADLSIEK-------RFLDLLEPLG 1472 eRrqkLe<-* +R+++Le pf00527 1473 RRKKQLE 1479 SM00150: domain 12 of 17, from 1485 to 1585: score 92.6, E = 4.7e-23 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q rd++++ W+ee +l++s d+g l++v+ +kk q+l++ pf00527 1485 LQISRDLEDETLWVEERLPLAQSADYG--TNLQTVQLFMKKNQTLQN 1529 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e+ h +rv+++ + g+qL+e+ + d +++eerl +l++ W++L+e+a+ pf00527 1530 EILGHTPRVEDVLQRGQQLVEA-AEIDCQDLEERLGHLQSSWDRLREAAA 1578 eRrqkLe<-* R q+L pf00527 1579 GRLQRLR 1585 SM00150: domain 13 of 17, from 1591 to 1691: score 91.5, E = 1e-22 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea qq++ dade+eaW++e+e ++ s++++ kD+e++ ++lk+H + ++ pf00527 1591 QQYYLDADEAEAWIGEQELYVISDEIP--KDEEGAIVMLKRHLRQQR 1635 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae ++ ++ +++l ++ L+++ ghp+ e+I + + +++++++ L++ ae pf00527 1636 AVEDYGRNIKQLASRAQGLLSA-GHPEGEQIIRLQGQVDKHYAGLKDVAE 1684 eRrqkLe<-* eR++kLe pf00527 1685 ERKRKLE 1691 SM00150: domain 14 of 17, from 1697 to 1798: score 93.8, E = 2e-23 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +q+ r+ d+le+W++eke ++ss ++g +D ++v l +k+ ++ + pf00527 1697 FQLKRETDDLEQWISEKELVASSPEMG--QDFDHVTLLRDKFRDFAR 1741 el.aaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlela e +a +ervd++n+ e+Li++ gh +a++I e+ + lne W++Llel pf00527 1742 ETgAIGQERVDNVNAFIERLIDA-GHSEAATIAEWKDGLNEMWADLLELI 1790 eeRrqkLe<-* + R q L pf00527 1791 DTRMQLLA 1798 SM00150: domain 15 of 17, from 1804 to 1904: score 68.4, E = 8.8e-16 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++++ +e++ ++ek + l ed+g D +++e+ + H a+e+ pf00527 1804 HRYFYTGAEILGLIDEKHREL-PEDVG--LDASTAESFHRVHTAFER 1847 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae el + +v++ ++ + +L ++ ++ ae+I+++ +e+ ++W++Ll++++ pf00527 1848 ELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACA 1897 eRrqkLe<-* Rr +L pf00527 1898 GRRTQLV 1904 SM00150: domain 16 of 17, from 1910 to 2010: score 98.8, E = 6.2e-25 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F++ a++l++W+e+ ++ ++++ + +D++sve l+k Hq + a pf00527 1910 FRFFSMARDLLSWMESIIRQIETQERP--RDVSSVELLMKYHQGINA 1954 elaaheervdalnelgeqLieesghpdaeeIeerleelnerWeeLlelae e++++ ++a+ elge L+++ +h ++eeI+e+l+++ +r++e e++e pf00527 1955 EIETRSKNFSACLELGESLLQR-QHQASEEIREKLQQVMSRRKEMNEKWE 2003 eRrqkLe<-* +R+++L pf00527 2004 ARWERLR 2010 SM00150: domain 17 of 17, from 2016 to 2258: score 43.4, E = 3e-08 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea qF rda +eaWl +e++l+s d+g ++++sve+l+k+H+a+e+ pf00527 2016 CQFSRDASVAEAWLIAQEPYLASGDFG--HTVDSVEKLIKRHEAFEK 2060 elaaheervdalne.lgeqLiee.sghpdaeeIeerl............. a ++er+ al++++ +L+e++ + aee + +++++ ++ + ++ pf00527 2061 STASWAERFAALEKpTTLELKERqIAERPAEETGPQEeegetageapvsh 2110 .................................................. + ++++++++++++ +++ +++++++++++++++++++++++++ + pf00527 2111 haatertspgeeegtwpqnlqqppppgqhkdgqkstgderptteplfkvl 2160 .................................................. +++ ++++++ + + +++++++ + ++ +++++ ++++++ ++++ ++ pf00527 2161 dtplsegdepatlpaprdhgqsvqmegylgrkhdlegpnkkasnrswnnl 2210 ..........................eelnerWeeLlelaeeRrqkLe<- ++++ + ++ ++ + + ++ee + +++++e a++ ++k pf00527 2211 ycvlrnseltfykdaknlalgmpyhgEEPLALRHAICEIAANYKKKKH 2258 * pf00527 - - SM00233: domain 1 of 1, from 2183 to 2294: score 64.9, E = 1e-14 *->vikeGwLlkks..........k.swkkryfvLfngvLlyyksk.... v++eG+L +k++ +++++ +++sw y+vL+n+ L++yk+ ++ pf00527 2183 VQMEGYLGRKHdlegpnkkasNrSWNNLYCVLRNSELTFYKDAknla 2229 .....kpkgsipLsgcsvre.p.......cFeivt.dr.tlllqAeseee + + +++ L++++++ ++ ++++++F+++ ++++++l++ ++eee pf00527 2230 lgmpyHGEEPLALRHAICEIaAnykkkkhVFKLRLsNGsEWLFHGKDEEE 2279 reeWvealqsaiaka<-* + +W++ ai+++ pf00527 2280 MLSWLQGVSTAINES 2294 //