# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Opf00882.fasta.nr -Q pf00882.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 pf00882, 128 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842315 sequences Expectation_n fit: rho(ln(x))= 5.2710+/-0.000184; mu= 5.6747+/- 0.010 mean_var=72.7522+/-14.000, 0's: 38 Z-trim: 39 B-trim: 0 in 0/66 Lambda= 0.150367 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088412|dbj|BAD92653.1| integrin-linked kinase ( 128) 885 200.0 6.8e-50 gi|148684864|gb|EDL16811.1| mCG19714, isoform CRA_ ( 126) 209 53.4 9.4e-06 gi|149068451|gb|EDM18003.1| integrin linked kinase ( 126) 209 53.4 9.4e-06 gi|149068458|gb|EDM18010.1| integrin linked kinase ( 171) 209 53.5 1.2e-05 gi|148684861|gb|EDL16808.1| mCG19714, isoform CRA_ ( 228) 209 53.6 1.5e-05 gi|148684865|gb|EDL16812.1| mCG19714, isoform CRA_ ( 233) 209 53.6 1.5e-05 gi|148684862|gb|EDL16809.1| mCG19714, isoform CRA_ ( 329) 209 53.7 2e-05 gi|148684867|gb|EDL16814.1| mCG19714, isoform CRA_ ( 420) 209 53.7 2.4e-05 gi|9973374|sp|P57044|ILK_CAVPO Integrin-linked pro ( 451) 209 53.8 2.6e-05 gi|1586023|prf||2202330A beta integrin-linked prot ( 451) 209 53.8 2.6e-05 gi|8648885|emb|CAB94832.1| integrin-linked kinase- ( 452) 209 53.8 2.6e-05 gi|33991800|gb|AAH56593.1| Integrin linked kinase ( 452) 209 53.8 2.6e-05 gi|2739450|gb|AAB94646.1| integrin binding protein ( 452) 209 53.8 2.6e-05 gi|57102650|ref|XP_534040.1| PREDICTED: similar to ( 452) 209 53.8 2.6e-05 gi|109892473|sp|Q3SWY2|ILK_BOVIN Integrin-linked p ( 452) 209 53.8 2.6e-05 gi|81916552|sp|Q99J82.1|ILK_RAT Integrin-linked pr ( 452) 209 53.8 2.6e-05 gi|75070497|sp|Q5R5V4.1|ILK_PONAB Integrin-linked ( 452) 209 53.8 2.6e-05 gi|9973397|sp|Q13418|ILK_HUMAN Integrin-linked pro ( 452) 209 53.8 2.6e-05 gi|126330161|ref|XP_001363471.1| PREDICTED: simila ( 452) 209 53.8 2.6e-05 gi|10505269|gb|AAG18430.1|AF296130_1 integrin-link ( 452) 209 53.8 2.6e-05 gi|61365170|gb|AAX42665.1| integrin-linked kinase ( 453) 209 53.8 2.6e-05 gi|109107472|ref|XP_001108844.1| PREDICTED: simila ( 482) 209 53.8 2.7e-05 gi|47227823|emb|CAG08986.1| unnamed protein produc ( 505) 209 53.8 2.8e-05 gi|49257383|gb|AAH73649.1| MGC82989 protein [Xenop ( 452) 204 52.7 5.5e-05 gi|170285069|gb|AAI61412.1| Unknown (protein for M ( 452) 204 52.7 5.5e-05 gi|50603684|gb|AAH77478.1| Ilk-prov protein [Xenop ( 452) 204 52.7 5.5e-05 gi|47227106|emb|CAG00468.1| unnamed protein produc ( 580) 196 51.0 0.00022 >>gi|62088412|dbj|BAD92653.1| integrin-linked kinase var (128 aa) initn: 885 init1: 885 opt: 885 Z-score: 1050.9 bits: 200.0 E(): 6.8e-50 Smith-Waterman score: 885; 100.000% identity (100.000% similar) in 128 aa overlap (1-128:1-128) 10 20 30 40 50 60 pf0088 GLVACSRTSVQQTLPLRHPLPTLTRLYLASRGHSQGSSRSPELLHRPPLAGDAAQAPYPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GLVACSRTSVQQTLPLRHPLPTLTRLYLASRGHSQGSSRSPELLHRPPLAGDAAQAPYPQ 10 20 30 40 50 60 70 80 90 100 110 120 pf0088 HKHFSPVEDKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HKHFSPVEDKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDN 70 80 90 100 110 120 pf0088 TENDLNQG :::::::: gi|620 TENDLNQG >>gi|148684864|gb|EDL16811.1| mCG19714, isoform CRA_d [M (126 aa) initn: 209 init1: 209 opt: 209 Z-score: 258.5 bits: 53.4 E(): 9.4e-06 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|148 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|148 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 40 50 60 70 80 90 >>gi|149068451|gb|EDM18003.1| integrin linked kinase, is (126 aa) initn: 209 init1: 209 opt: 209 Z-score: 258.5 bits: 53.4 E(): 9.4e-06 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|149 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|149 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 40 50 60 70 80 90 >>gi|149068458|gb|EDM18010.1| integrin linked kinase, is (171 aa) initn: 209 init1: 209 opt: 209 Z-score: 256.6 bits: 53.5 E(): 1.2e-05 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|149 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|149 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 40 50 60 70 80 90 >>gi|148684861|gb|EDL16808.1| mCG19714, isoform CRA_b [M (228 aa) initn: 209 init1: 209 opt: 209 Z-score: 254.8 bits: 53.6 E(): 1.5e-05 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|148 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|148 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 40 50 60 70 80 90 >>gi|148684865|gb|EDL16812.1| mCG19714, isoform CRA_e [M (233 aa) initn: 209 init1: 209 opt: 209 Z-score: 254.7 bits: 53.6 E(): 1.5e-05 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|148 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|148 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 40 50 60 70 80 90 >>gi|148684862|gb|EDL16809.1| mCG19714, isoform CRA_c [M (329 aa) initn: 209 init1: 209 opt: 209 Z-score: 252.6 bits: 53.7 E(): 2e-05 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|148 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|148 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 40 50 60 70 80 90 >>gi|148684867|gb|EDL16814.1| mCG19714, isoform CRA_f [M (420 aa) initn: 209 init1: 209 opt: 209 Z-score: 251.1 bits: 53.7 E(): 2.4e-05 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|148 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|148 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKDLVAN 40 50 60 70 80 90 >>gi|9973374|sp|P57044|ILK_CAVPO Integrin-linked protein (451 aa) initn: 209 init1: 209 opt: 209 Z-score: 250.6 bits: 53.8 E(): 2.6e-05 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|997 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|997 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 40 50 60 70 80 90 >>gi|1586023|prf||2202330A beta integrin-linked protein (451 aa) initn: 209 init1: 209 opt: 209 Z-score: 250.6 bits: 53.8 E(): 2.6e-05 Smith-Waterman score: 209; 100.000% identity (100.000% similar) in 30 aa overlap (99-128:1-30) 70 80 90 100 110 120 pf0088 DKAWGSSSFPGSLHSPQASPIQGTRRRDAAMDDIFTQCREGNAVAVRLWLDNTENDLNQG :::::::::::::::::::::::::::::: gi|158 MDDIFTQCREGNAVAVRLWLDNTENDLNQG 10 20 30 gi|158 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 40 50 60 70 80 90 128 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 04:17:56 2008 done: Wed Aug 13 04:20:58 2008 Total Scan time: 541.380 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]