hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-04270861/chunk_1/iprscan-20080813-04270861.nocrc
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Query sequence: pf00940
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 100.6    1.8e-25   5
SM00389                                                  26.8    0.00055   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/5     259   283 ..     1    23 []    17.3      2.1
SM00355      2/5     320   344 ..     1    23 []    22.9    0.046
SM00355      3/5     429   453 ..     1    23 []    15.1      6.3
SM00389      1/1     897   971 ..     1    63 []    26.8  0.00055
SM00355      4/5     983  1005 ..     1    23 []    19.3     0.53
SM00355      5/5    1050  1073 ..     1    23 []    26.0   0.0051

Alignments of top-scoring domains:
SM00355: domain 1 of 5, from 259 to 283: score 17.3, E = 2.1
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C+  C+  + +  +L+ Hm ++ H   
     pf00940   259    FRCKD-CSAAYDTLvELTVHMNetGH    283  

SM00355: domain 2 of 5, from 320 to 344: score 22.9, E = 0.046
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg sf s ++L  Hm +++H   
     pf00940   320    LKCMY-CGHSFESLqDLSVHMIktKH    344  

SM00355: domain 3 of 5, from 429 to 453: score 15.1, E = 6.3
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg s  + ++L+ Hm+ + H   
     pf00940   429    LKCME-CGSSHDTLqQLTAHMMvtGH    453  

SM00389: domain 1 of 1, from 897 to 971: score 26.8, E = 0.00055
                   *->krrkRts.ftpeQleeLEkeFeknp...........YPsreereeLA
                      kr+ R+s+++p+ l +L++ F+ + +++++++   + + ++er +++
     pf00940   897    KRKGRQSnWNPQHLLILQAQFASSLrettegkyimsDLGPQERVHIS 943  

                   keLgLterqVkvWFQNRRakwkrqekkk<-*
                   k +gL+ + +  W  N  + ++r    k   
     pf00940   944 KFTGLSMTTISHWLANVKYQLRRTGGTK    971  

SM00355: domain 4 of 5, from 983 to 1005: score 19.3, E = 0.53
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C  +f++++ ++ H+ +H   
     pf00940   983    FFCND-CASQFRTAsTYISHLETH    1005 

SM00355: domain 5 of 5, from 1050 to 1073: score 26.0, E = 0.0051
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C++ C+++f sk+a k H+ ++H   
     pf00940  1050    FQCKL-CNRTFASKhAVKLHLSkTH    1073 

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