hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-04341945/chunk_1/iprscan-20080813-04341945.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf01047 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06010.2.ls Domain of Unknown Function (DUF906) 645.8 3.2e-191 1 PF06010.2.fs Domain of Unknown Function (DUF906) 644.0 1.1e-190 1 PF02135.6.fs TAZ zinc finger 241.8 1.3e-69 2 PF09030.1.ls Creb binding 236.7 4.7e-68 1 PF09030.1.fs Creb binding 234.9 1.6e-67 1 PF02135.6.ls TAZ zinc finger 218.8 1.1e-62 2 PF02172.6.ls KIX domain 184.5 2.4e-52 1 PF02172.6.fs KIX domain 182.5 9.7e-52 1 PF00439.15.ls Bromodomain 153.4 5.4e-43 1 PF00439.15.fs Bromodomain 151.4 2.1e-42 1 PF06001.3.fs Domain of Unknown Function (DUF902) 106.2 7.8e-31 1 PF06001.3.ls Domain of Unknown Function (DUF902) 108.2 2.2e-29 1 PF00569.8.fs Zinc finger, ZZ type 75.3 3.8e-20 1 PF00569.8.ls Zinc finger, ZZ type 77.2 4.8e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02135.6.ls 1/2 416 479 .. 1 97 [] 76.6 7.3e-20 PF02135.6.fs 1/2 416 473 .. 1 69 [. 101.4 2.5e-27 PF02172.6.fs 1/1 617 697 .. 1 81 [] 182.5 9.7e-52 PF02172.6.ls 1/1 617 697 .. 1 81 [] 184.5 2.4e-52 PF00439.15.fs 1/1 1120 1210 .. 1 92 [] 151.4 2.1e-42 PF00439.15.ls 1/1 1120 1210 .. 1 92 [] 153.4 5.4e-43 PF06001.3.fs 1/1 1211 1271 .. 1 61 [] 106.2 7.8e-31 PF06001.3.ls 1/1 1211 1271 .. 1 61 [] 108.2 2.2e-29 PF06010.2.fs 1/1 1346 1583 .. 1 270 [] 644.0 1.1e-190 PF06010.2.ls 1/1 1346 1583 .. 1 270 [] 645.8 3.2e-191 PF00569.8.fs 1/1 1731 1772 .. 1 46 [] 75.3 3.8e-20 PF00569.8.ls 1/1 1731 1772 .. 1 46 [] 77.2 4.8e-20 PF02135.6.ls 2/2 1794 1873 .. 1 97 [] 142.3 1.2e-39 PF02135.6.fs 2/2 1794 1873 .. 1 97 [] 140.4 4.4e-39 PF09030.1.ls 1/1 2046 2145 .. 1 119 [] 236.7 4.7e-68 PF09030.1.fs 1/1 2046 2145 .. 1 119 [] 234.9 1.6e-67 Alignments of top-scoring domains: PF02135.6.ls: domain 1 of 2, from 416 to 479: score 76.6, E = 7.3e-20 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P++r+ liqqql+llL HAhkC++re++Ng++++ C+lp pf01047 416 PEKRK-LIQQQLVLLL-HAHKCQRREQANGEVRA---------CSLP 451 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +Cr+mK+vl+Hm++C+++k+C+ +++ P pf01047 452 HCRTMKNVLNHMTHCQAGKACQ--------AILG--------------SP 479 <-* pf01047 - - PF02135.6.fs: domain 1 of 2, from 416 to 473: score 101.4, E = 2.5e-27 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P++r+ liqqql+llL HAhkC++re++Ng++++ C+lp pf01047 416 PEKRK-LIQQQLVLLL-HAHKCQRREQANGEVRA---------CSLP 451 nCrkmKkvlrHmknCkkrkdCt<-* +Cr+mK+vl+Hm++C+++k+C+ pf01047 452 HCRTMKNVLNHMTHCQAGKACQ 473 PF02172.6.fs: domain 1 of 1, from 617 to 697: score 182.5, E = 9.7e-52 *->lltkdwkeqitrdLRnHlVgKLvkaifPrpdqeamnDeRmkeLiayA +++k w+e++t+dLR+HlV+KLv+aifP+pd++a++D+Rm++L+ayA pf01047 617 GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYA 663 rkvEkemfEsandrdEYYhLlaekiykiqKeLqe<-* +kvE++m+Esan+rdEYYhLlaekiykiqKeL+e pf01047 664 KKVEGDMYESANSRDEYYHLLAEKIYKIQKELEE 697 PF02172.6.ls: domain 1 of 1, from 617 to 697: score 184.5, E = 2.4e-52 *->lltkdwkeqitrdLRnHlVgKLvkaifPrpdqeamnDeRmkeLiayA +++k w+e++t+dLR+HlV+KLv+aifP+pd++a++D+Rm++L+ayA pf01047 617 GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYA 663 rkvEkemfEsandrdEYYhLlaekiykiqKeLqe<-* +kvE++m+Esan+rdEYYhLlaekiykiqKeL+e pf01047 664 KKVEGDMYESANSRDEYYHLLAEKIYKIQKELEE 697 PF00439.15.fs: domain 1 of 1, from 1120 to 1210: score 151.4, E = 2.1e-42 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l+++l+++leal +++p +lpf++pV+p l++PDY++i+k+PMDL+ pf01047 1120 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLS 1166 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIk+kl++g+Y ++++++v+D++Lmf+NA+ YN + s+vyk++ k pf01047 1167 TIKRKLDTGQY-QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSK 1210 PF00439.15.ls: domain 1 of 1, from 1120 to 1210: score 153.4, E = 5.4e-43 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l+++l+++leal +++p +lpf++pV+p l++PDY++i+k+PMDL+ pf01047 1120 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLS 1166 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIk+kl++g+Y ++++++v+D++Lmf+NA+ YN + s+vyk++ k pf01047 1167 TIKRKLDTGQY-QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSK 1210 PF06001.3.fs: domain 1 of 1, from 1211 to 1271: score 106.2, E = 7.8e-31 *->aeenkamEispsmnScqLCavekLvFePvpiyCyGkqlCgirikkna ++e++++Ei+p+m+S+++C+++k++F+P++++CyGkqlC+i++++++ pf01047 1211 LAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQLCTIPRDAAY 1257 lhYsevenendkav<-* ++Y++++++++k++ pf01047 1258 YSYQNRYHFCEKCF 1271 PF06001.3.ls: domain 1 of 1, from 1211 to 1271: score 108.2, E = 2.2e-29 *->aeenkamEispsmnScqLCavekLvFePvpiyCyGkqlCgirikkna ++e++++Ei+p+m+S+++C+++k++F+P++++CyGkqlC+i++++++ pf01047 1211 LAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQLCTIPRDAAY 1257 lhYsevenendkav<-* ++Y++++++++k++ pf01047 1258 YSYQNRYHFCEKCF 1271 PF06010.2.fs: domain 1 of 1, from 1346 to 1583: score 644.0, E = 1.1e-190 *->kekrkenkfedstilGAkkLPtTkLstfLEqRvnkfLkkeRqqrAkA +++rkenkf+ Ak+L+tT+L+++LE+RvnkfL+++ pf01047 1346 GRPRKENKFS------AKRLQTTRLGNHLEDRVNKFLRRQ------- 1379 sGKSvdevpeaeeypvtiRVvsSaDKtleVkpqmksrFveseqfpeeFPY ++pea+e v++RVv+S+DKt+eVkp+mksrFv+s++++e+FPY pf01047 1380 ------NHPEAGE--VFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPY 1421 RsKAifaFekidGVDVCfFGmhVQEYGSeCPaPNtRrVYIaYLDSVhfFr R+KA+faFe+idGVDVCfFGmhVQEYGS+CP+PNtRrVYI+YLDS+hfFr pf01047 1422 RTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTRRVYISYLDSIHFFR 1471 PEiksfaGraLRTaVYHEiLiGYLeYaKklGYttahIWACPPseGDDYIf P r+LRTaVYHEiLiGYLeY+KklGY+t+hIWACPPseGDDYIf pf01047 1472 P-------RCLRTAVYHEILIGYLEYVKKLGYVTGHIWACPPSEGDDYIF 1514 hCHPpeQKiPKpkrLqeWYkkMLdKAvkervVvevtnLYkdifkqaeedk hCHPp+QKiPKpkrLqeWYkkMLdKA++er++++ Ykdifkqa+ed+ pf01047 1515 HCHPPDQKIPKPKRLQEWYKKMLDKAFAERIIHD----YKDIFKQATEDR 1560 ltsAaeLPYFEGDFWPNviEesI<-* ltsA+eLPYFEGDFWPNv+EesI pf01047 1561 LTSAKELPYFEGDFWPNVLEESI 1583 PF06010.2.ls: domain 1 of 1, from 1346 to 1583: score 645.8, E = 3.2e-191 *->kekrkenkfedstilGAkkLPtTkLstfLEqRvnkfLkkeRqqrAkA +++rkenkf+ Ak+L+tT+L+++LE+RvnkfL+++ pf01047 1346 GRPRKENKFS------AKRLQTTRLGNHLEDRVNKFLRRQ------- 1379 sGKSvdevpeaeeypvtiRVvsSaDKtleVkpqmksrFveseqfpeeFPY ++pea+e v++RVv+S+DKt+eVkp+mksrFv+s++++e+FPY pf01047 1380 ------NHPEAGE--VFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPY 1421 RsKAifaFekidGVDVCfFGmhVQEYGSeCPaPNtRrVYIaYLDSVhfFr R+KA+faFe+idGVDVCfFGmhVQEYGS+CP+PNtRrVYI+YLDS+hfFr pf01047 1422 RTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTRRVYISYLDSIHFFR 1471 PEiksfaGraLRTaVYHEiLiGYLeYaKklGYttahIWACPPseGDDYIf P r+LRTaVYHEiLiGYLeY+KklGY+t+hIWACPPseGDDYIf pf01047 1472 P-------RCLRTAVYHEILIGYLEYVKKLGYVTGHIWACPPSEGDDYIF 1514 hCHPpeQKiPKpkrLqeWYkkMLdKAvkervVvevtnLYkdifkqaeedk hCHPp+QKiPKpkrLqeWYkkMLdKA++er++++ Ykdifkqa+ed+ pf01047 1515 HCHPPDQKIPKPKRLQEWYKKMLDKAFAERIIHD----YKDIFKQATEDR 1560 ltsAaeLPYFEGDFWPNviEesI<-* ltsA+eLPYFEGDFWPNv+EesI pf01047 1561 LTSAKELPYFEGDFWPNVLEESI 1583 PF00569.8.fs: domain 1 of 1, from 1731 to 1772: score 75.3, E = 3.8e-20 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< +++vytC++Ck+ ++++R+hC++C+dYDLC++C++t k++ Hkm pf01047 1731 DRFVYTCNECKH--HVETRWHCTVCEDYDLCINCYNT--KSHAHKM 1772 -* pf01047 - - PF00569.8.ls: domain 1 of 1, from 1731 to 1772: score 77.2, E = 4.8e-20 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< +++vytC++Ck+ ++++R+hC++C+dYDLC++C++t k++ Hkm pf01047 1731 DRFVYTCNECKH--HVETRWHCTVCEDYDLCINCYNT--KSHAHKM 1772 -* pf01047 - - PF02135.6.ls: domain 2 of 2, from 1794 to 1873: score 142.3, E = 1.2e-39 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P+e r+l++q+++++LvHA++Cr ++ C+lp pf01047 1794 PQESRRLSIQRCIQSLVHACQCRNAN-----------------CSLP 1823 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +C+kmK+v++H+k Ck++ +++cp+Ck++++L++yHaK+C+e +CpV+++ pf01047 1824 SCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPFC 1873 <-* pf01047 - - PF02135.6.fs: domain 2 of 2, from 1794 to 1873: score 140.4, E = 4.4e-39 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P+e r+l++q+++++LvHA++Cr ++ C+lp pf01047 1794 PQESRRLSIQRCIQSLVHACQCRNAN-----------------CSLP 1823 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +C+kmK+v++H+k Ck++ +++cp+Ck++++L++yHaK+C+e +CpV+++ pf01047 1824 SCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPFC 1873 <-* pf01047 - - PF09030.1.ls: domain 1 of 1, from 2046 to 2145: score 236.7, E = 4.7e-68 *->qqpgqwpqgpLPqqqqlqpgmPrpVmqmrtaqvavaLnmGPrpqavQ ++pgqw+q+pLPqqq++ pg+PrpV++m+ aq+ava GPr+++vQ pf01047 2046 MPPGQWQQAPLPQQQPM-PGLPRPVISMQ-AQAAVA---GPRMPSVQ 2087 paisPLkrgiavapnALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF p+ r+i +p+ALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF pf01047 2088 PP-----RSI--SPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAF 2130 IKQRTAKYvAsnPQPiPGqPgm<-* IKQRTAKYvA+ Q Pgm pf01047 2131 IKQRTAKYVAN--Q-----PGM 2145 PF09030.1.fs: domain 1 of 1, from 2046 to 2145: score 234.9, E = 1.6e-67 *->qqpgqwpqgpLPqqqqlqpgmPrpVmqmrtaqvavaLnmGPrpqavQ ++pgqw+q+pLPqqq++ pg+PrpV++m+ aq+ava GPr+++vQ pf01047 2046 MPPGQWQQAPLPQQQPM-PGLPRPVISMQ-AQAAVA---GPRMPSVQ 2087 paisPLkrgiavapnALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF p+ r+i +p+ALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF pf01047 2088 PP-----RSI--SPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAF 2130 IKQRTAKYvAsnPQPiPGqPgm<-* IKQRTAKYvA+ Q Pgm pf01047 2131 IKQRTAKYVAN--Q-----PGM 2145 //