hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-04341945/chunk_1/iprscan-20080813-04341945.nocrc
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Query sequence: pf01047
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00297                                                 158.4    7.1e-43   1
SM00551                                                 152.7    3.8e-41   2
SM00291                                                  66.0    4.8e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00551    1/2     416   481 ..     1   102 []    37.4  1.8e-06
SM00297    1/1    1114  1224 ..     1   118 []   158.4  7.1e-43
SM00291    1/1    1731  1772 ..     1    46 []    66.0  4.8e-15
SM00551    2/2    1796  1874 ..     1   102 []   115.3    7e-30

Alignments of top-scoring domains:
SM00551: domain 1 of 2, from 416 to 481: score 37.4, E = 1.8e-06
                   *->ptrykqiqrqLelLlHArrdGCrarepenreaAaknqPapHakCqyp
                      p+++k iq+qL lLlHA++  C++re  n e            C++p
     pf01047   416    PEKRKLIQQQLVLLLHAHK--CQRREQANGEV---------RACSLP 451  

                   nCkkmKkllrHmnsCKvrkkCkyggCascKqlwqLLrLHskhCkdsnqCp
                   +C++mK +l Hm+ C ++k         c  ++            ++   
     pf01047   452 HCRTMKNVLNHMTHCQAGK--------ACQAILG----------SPA--- 480  

                   Vckcv<-*
                       +   
     pf01047   481 ----S    481  

SM00297: domain 1 of 1, from 1114 to 1224: score 158.4, E = 7.1e-43
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      + k+ +  q+l+ +l ++ +++        p + pF++pvd+++Lg+
     pf01047  1114    IFKpEELRQALMPTLEALYRQD--------PESLPFRQPVDPQLLGI 1152 

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY+di+k+PMDL+tIk+kl++g+Y+ + + v+D++Lmf+NA+ YN++ s
     pf01047  1153 PDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTS 1202 

                   evykdAkkLeklfeeklkelpp<-*
                    vyk+  kL ++fe++++ +++   
     pf01047  1203 RVYKFCSKLAEVFEQEIDPVMQ    1224 

SM00291: domain 1 of 1, from 1731 to 1772: score 66.0, E = 4.8e-15
                   *->vhhsvsCdgCgkepivgvRYkClvCpDYDLCesCfakGghhgeHam<
                      ++++++C+ C++  +v++R++C+vC+DYDLC++C+++  +++ H+m 
     pf01047  1731    DRFVYTCNECKH--HVETRWHCTVCEDYDLCINCYNT--KSHAHKM  1772 

                   -*
                     
     pf01047     -    -    

SM00551: domain 2 of 2, from 1796 to 1874: score 115.3, E = 7e-30
                   *->ptrykqiqrqLelLlHArrdGCrarepenreaAaknqPapHakCqyp
                      ++r+++iqr++  L+HA++  Cr                  a+C++p
     pf01047  1796    ESRRLSIQRCIQSLVHACQ--CRN-----------------ANCSLP 1823 

                   nCkkmKkllrHmnsCKvrkkCkyggCascKqlwqLLrLHskhCkdsnqCp
                   +C kmK++++H+++CK     ++ggC+ cKql++L+++H+khC++ + Cp
     pf01047  1824 SCQKMKRVVQHTKGCKRK---TNGGCPVCKQLIALCCYHAKHCQENK-CP 1869 

                   Vckcv<-*
                   V++c+   
     pf01047  1870 VPFCL    1874 

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