hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090511/iprscan-20090511-15160738/chunk_1/iprscan-20090511-15160738.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pf01047s1 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06010.2.ls Domain of Unknown Function (DUF906) 645.8 3.2e-191 1 PF06010.2.fs Domain of Unknown Function (DUF906) 644.0 1.1e-190 1 PF02135.6.ls TAZ zinc finger 315.7 7.7e-92 2 PF02135.6.fs TAZ zinc finger 312.0 9.7e-91 2 PF09030.1.ls Creb binding 236.7 4.7e-68 1 PF09030.1.fs Creb binding 234.9 1.6e-67 1 PF02172.6.ls KIX domain 184.5 2.4e-52 1 PF02172.6.fs KIX domain 182.5 9.7e-52 1 PF00439.15.ls Bromodomain 153.4 5.4e-43 1 PF00439.15.fs Bromodomain 151.4 2.1e-42 1 PF06001.3.fs Domain of Unknown Function (DUF902) 106.2 7.8e-31 1 PF06001.3.ls Domain of Unknown Function (DUF902) 108.2 2.2e-29 1 PF00569.8.fs Zinc finger, ZZ type 75.3 3.8e-20 1 PF00569.8.ls Zinc finger, ZZ type 77.2 4.8e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02135.6.ls 1/2 416 500 .. 1 97 [] 173.4 5.1e-49 PF02135.6.fs 1/2 416 500 .. 1 97 [] 171.6 1.8e-48 PF02172.6.fs 1/1 655 735 .. 1 81 [] 182.5 9.7e-52 PF02172.6.ls 1/1 655 735 .. 1 81 [] 184.5 2.4e-52 PF00439.15.fs 1/1 1158 1248 .. 1 92 [] 151.4 2.1e-42 PF00439.15.ls 1/1 1158 1248 .. 1 92 [] 153.4 5.4e-43 PF06001.3.fs 1/1 1249 1309 .. 1 61 [] 106.2 7.8e-31 PF06001.3.ls 1/1 1249 1309 .. 1 61 [] 108.2 2.2e-29 PF06010.2.fs 1/1 1384 1621 .. 1 270 [] 644.0 1.1e-190 PF06010.2.ls 1/1 1384 1621 .. 1 270 [] 645.8 3.2e-191 PF00569.8.fs 1/1 1769 1810 .. 1 46 [] 75.3 3.8e-20 PF00569.8.ls 1/1 1769 1810 .. 1 46 [] 77.2 4.8e-20 PF02135.6.ls 2/2 1832 1911 .. 1 97 [] 142.3 1.2e-39 PF02135.6.fs 2/2 1832 1911 .. 1 97 [] 140.4 4.4e-39 PF09030.1.ls 1/1 2084 2183 .. 1 119 [] 236.7 4.7e-68 PF09030.1.fs 1/1 2084 2183 .. 1 119 [] 234.9 1.6e-67 Alignments of top-scoring domains: PF02135.6.ls: domain 1 of 2, from 416 to 500: score 173.4, E = 5.1e-49 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P++r+ liqqql+llL HAhkC++re++Ng++++ C+lp pf01047s1 416 PEKRK-LIQQQLVLLL-HAHKCQRREQANGEVRA---------CSLP 451 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +Cr+mK+vl+Hm++C+++k+C+++hC+ss+q+i+ H+KnC++++CpVC+P pf01047s1 452 HCRTMKNVLNHMTHCQAGKACQVAHCASSRQIIS-HWKNCTRHDCPVCLP 500 <-* pf01047s1 - - PF02135.6.fs: domain 1 of 2, from 416 to 500: score 171.6, E = 1.8e-48 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P++r+ liqqql+llL HAhkC++re++Ng++++ C+lp pf01047s1 416 PEKRK-LIQQQLVLLL-HAHKCQRREQANGEVRA---------CSLP 451 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +Cr+mK+vl+Hm++C+++k+C+++hC+ss+q+i+ H+KnC++++CpVC+P pf01047s1 452 HCRTMKNVLNHMTHCQAGKACQVAHCASSRQIIS-HWKNCTRHDCPVCLP 500 <-* pf01047s1 - - PF02172.6.fs: domain 1 of 1, from 655 to 735: score 182.5, E = 9.7e-52 *->lltkdwkeqitrdLRnHlVgKLvkaifPrpdqeamnDeRmkeLiayA +++k w+e++t+dLR+HlV+KLv+aifP+pd++a++D+Rm++L+ayA pf01047s1 655 GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYA 701 rkvEkemfEsandrdEYYhLlaekiykiqKeLqe<-* +kvE++m+Esan+rdEYYhLlaekiykiqKeL+e pf01047s1 702 KKVEGDMYESANSRDEYYHLLAEKIYKIQKELEE 735 PF02172.6.ls: domain 1 of 1, from 655 to 735: score 184.5, E = 2.4e-52 *->lltkdwkeqitrdLRnHlVgKLvkaifPrpdqeamnDeRmkeLiayA +++k w+e++t+dLR+HlV+KLv+aifP+pd++a++D+Rm++L+ayA pf01047s1 655 GVRKGWHEHVTQDLRSHLVHKLVQAIFPTPDPAALKDRRMENLVAYA 701 rkvEkemfEsandrdEYYhLlaekiykiqKeLqe<-* +kvE++m+Esan+rdEYYhLlaekiykiqKeL+e pf01047s1 702 KKVEGDMYESANSRDEYYHLLAEKIYKIQKELEE 735 PF00439.15.fs: domain 1 of 1, from 1158 to 1248: score 151.4, E = 2.1e-42 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l+++l+++leal +++p +lpf++pV+p l++PDY++i+k+PMDL+ pf01047s1 1158 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLS 1204 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIk+kl++g+Y ++++++v+D++Lmf+NA+ YN + s+vyk++ k pf01047s1 1205 TIKRKLDTGQY-QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSK 1248 PF00439.15.ls: domain 1 of 1, from 1158 to 1248: score 153.4, E = 5.4e-43 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk l+++l+++leal +++p +lpf++pV+p l++PDY++i+k+PMDL+ pf01047s1 1158 LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLS 1204 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* TIk+kl++g+Y ++++++v+D++Lmf+NA+ YN + s+vyk++ k pf01047s1 1205 TIKRKLDTGQY-QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSK 1248 PF06001.3.fs: domain 1 of 1, from 1249 to 1309: score 106.2, E = 7.8e-31 *->aeenkamEispsmnScqLCavekLvFePvpiyCyGkqlCgirikkna ++e++++Ei+p+m+S+++C+++k++F+P++++CyGkqlC+i++++++ pf01047s1 1249 LAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQLCTIPRDAAY 1295 lhYsevenendkav<-* ++Y++++++++k++ pf01047s1 1296 YSYQNRYHFCEKCF 1309 PF06001.3.ls: domain 1 of 1, from 1249 to 1309: score 108.2, E = 2.2e-29 *->aeenkamEispsmnScqLCavekLvFePvpiyCyGkqlCgirikkna ++e++++Ei+p+m+S+++C+++k++F+P++++CyGkqlC+i++++++ pf01047s1 1249 LAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQLCTIPRDAAY 1295 lhYsevenendkav<-* ++Y++++++++k++ pf01047s1 1296 YSYQNRYHFCEKCF 1309 PF06010.2.fs: domain 1 of 1, from 1384 to 1621: score 644.0, E = 1.1e-190 *->kekrkenkfedstilGAkkLPtTkLstfLEqRvnkfLkkeRqqrAkA +++rkenkf+ Ak+L+tT+L+++LE+RvnkfL+++ pf01047s1 1384 GRPRKENKFS------AKRLQTTRLGNHLEDRVNKFLRRQ------- 1417 sGKSvdevpeaeeypvtiRVvsSaDKtleVkpqmksrFveseqfpeeFPY ++pea+e v++RVv+S+DKt+eVkp+mksrFv+s++++e+FPY pf01047s1 1418 ------NHPEAGE--VFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPY 1459 RsKAifaFekidGVDVCfFGmhVQEYGSeCPaPNtRrVYIaYLDSVhfFr R+KA+faFe+idGVDVCfFGmhVQEYGS+CP+PNtRrVYI+YLDS+hfFr pf01047s1 1460 RTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTRRVYISYLDSIHFFR 1509 PEiksfaGraLRTaVYHEiLiGYLeYaKklGYttahIWACPPseGDDYIf P r+LRTaVYHEiLiGYLeY+KklGY+t+hIWACPPseGDDYIf pf01047s1 1510 P-------RCLRTAVYHEILIGYLEYVKKLGYVTGHIWACPPSEGDDYIF 1552 hCHPpeQKiPKpkrLqeWYkkMLdKAvkervVvevtnLYkdifkqaeedk hCHPp+QKiPKpkrLqeWYkkMLdKA++er++++ Ykdifkqa+ed+ pf01047s1 1553 HCHPPDQKIPKPKRLQEWYKKMLDKAFAERIIHD----YKDIFKQATEDR 1598 ltsAaeLPYFEGDFWPNviEesI<-* ltsA+eLPYFEGDFWPNv+EesI pf01047s1 1599 LTSAKELPYFEGDFWPNVLEESI 1621 PF06010.2.ls: domain 1 of 1, from 1384 to 1621: score 645.8, E = 3.2e-191 *->kekrkenkfedstilGAkkLPtTkLstfLEqRvnkfLkkeRqqrAkA +++rkenkf+ Ak+L+tT+L+++LE+RvnkfL+++ pf01047s1 1384 GRPRKENKFS------AKRLQTTRLGNHLEDRVNKFLRRQ------- 1417 sGKSvdevpeaeeypvtiRVvsSaDKtleVkpqmksrFveseqfpeeFPY ++pea+e v++RVv+S+DKt+eVkp+mksrFv+s++++e+FPY pf01047s1 1418 ------NHPEAGE--VFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPY 1459 RsKAifaFekidGVDVCfFGmhVQEYGSeCPaPNtRrVYIaYLDSVhfFr R+KA+faFe+idGVDVCfFGmhVQEYGS+CP+PNtRrVYI+YLDS+hfFr pf01047s1 1460 RTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTRRVYISYLDSIHFFR 1509 PEiksfaGraLRTaVYHEiLiGYLeYaKklGYttahIWACPPseGDDYIf P r+LRTaVYHEiLiGYLeY+KklGY+t+hIWACPPseGDDYIf pf01047s1 1510 P-------RCLRTAVYHEILIGYLEYVKKLGYVTGHIWACPPSEGDDYIF 1552 hCHPpeQKiPKpkrLqeWYkkMLdKAvkervVvevtnLYkdifkqaeedk hCHPp+QKiPKpkrLqeWYkkMLdKA++er++++ Ykdifkqa+ed+ pf01047s1 1553 HCHPPDQKIPKPKRLQEWYKKMLDKAFAERIIHD----YKDIFKQATEDR 1598 ltsAaeLPYFEGDFWPNviEesI<-* ltsA+eLPYFEGDFWPNv+EesI pf01047s1 1599 LTSAKELPYFEGDFWPNVLEESI 1621 PF00569.8.fs: domain 1 of 1, from 1769 to 1810: score 75.3, E = 3.8e-20 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< +++vytC++Ck+ ++++R+hC++C+dYDLC++C++t k++ Hkm pf01047s1 1769 DRFVYTCNECKH--HVETRWHCTVCEDYDLCINCYNT--KSHAHKM 1810 -* pf01047s1 - - PF00569.8.ls: domain 1 of 1, from 1769 to 1810: score 77.2, E = 4.8e-20 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< +++vytC++Ck+ ++++R+hC++C+dYDLC++C++t k++ Hkm pf01047s1 1769 DRFVYTCNECKH--HVETRWHCTVCEDYDLCINCYNT--KSHAHKM 1810 -* pf01047s1 - - PF02135.6.ls: domain 2 of 2, from 1832 to 1911: score 142.3, E = 1.2e-39 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P+e r+l++q+++++LvHA++Cr ++ C+lp pf01047s1 1832 PQESRRLSIQRCIQSLVHACQCRNAN-----------------CSLP 1861 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +C+kmK+v++H+k Ck++ +++cp+Ck++++L++yHaK+C+e +CpV+++ pf01047s1 1862 SCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPFC 1911 <-* pf01047s1 - - PF02135.6.fs: domain 2 of 2, from 1832 to 1911: score 140.4, E = 4.4e-39 *->PrerryliqqqllllLvHAhkCrarereNgkaavngQParHprCrlp P+e r+l++q+++++LvHA++Cr ++ C+lp pf01047s1 1832 PQESRRLSIQRCIQSLVHACQCRNAN-----------------CSLP 1861 nCrkmKkvlrHmknCkkrkdCtcphCksskqLinyHaKnCkesaCpVCiP +C+kmK+v++H+k Ck++ +++cp+Ck++++L++yHaK+C+e +CpV+++ pf01047s1 1862 SCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPFC 1911 <-* pf01047s1 - - PF09030.1.ls: domain 1 of 1, from 2084 to 2183: score 236.7, E = 4.7e-68 *->qqpgqwpqgpLPqqqqlqpgmPrpVmqmrtaqvavaLnmGPrpqavQ ++pgqw+q+pLPqqq++ pg+PrpV++m+ aq+ava GPr+++vQ pf01047s1 2084 MPPGQWQQAPLPQQQPM-PGLPRPVISMQ-AQAAVA---GPRMPSVQ 2125 paisPLkrgiavapnALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF p+ r+i +p+ALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF pf01047s1 2126 PP-----RSI--SPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAF 2168 IKQRTAKYvAsnPQPiPGqPgm<-* IKQRTAKYvA+ Q Pgm pf01047s1 2169 IKQRTAKYVAN--Q-----PGM 2183 PF09030.1.fs: domain 1 of 1, from 2084 to 2183: score 234.9, E = 1.6e-67 *->qqpgqwpqgpLPqqqqlqpgmPrpVmqmrtaqvavaLnmGPrpqavQ ++pgqw+q+pLPqqq++ pg+PrpV++m+ aq+ava GPr+++vQ pf01047s1 2084 MPPGQWQQAPLPQQQPM-PGLPRPVISMQ-AQAAVA---GPRMPSVQ 2125 paisPLkrgiavapnALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF p+ r+i +p+ALQDLLRTLKSPSSPqQQQQVLnILkSNPqLmAAF pf01047s1 2126 PP-----RSI--SPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAF 2168 IKQRTAKYvAsnPQPiPGqPgm<-* IKQRTAKYvA+ Q Pgm pf01047s1 2169 IKQRTAKYVAN--Q-----PGM 2183 //