hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090511/iprscan-20090511-15160738/chunk_1/iprscan-20090511-15160738.nocrc
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Query sequence: pf01047s1
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00551                                                 238.8    4.5e-67   2
SM00297                                                 158.4    7.1e-43   1
SM00291                                                  66.0    4.8e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00551    1/2     416   501 ..     1   102 []   123.5  2.3e-32
SM00297    1/1    1152  1262 ..     1   118 []   158.4  7.1e-43
SM00291    1/1    1769  1810 ..     1    46 []    66.0  4.8e-15
SM00551    2/2    1834  1912 ..     1   102 []   115.3    7e-30

Alignments of top-scoring domains:
SM00551: domain 1 of 2, from 416 to 501: score 123.5, E = 2.3e-32
                   *->ptrykqiqrqLelLlHArrdGCrarepenreaAaknqPapHakCqyp
                      p+++k iq+qL lLlHA++  C++re  n e            C++p
   pf01047s1   416    PEKRKLIQQQLVLLLHAHK--CQRREQANGEV---------RACSLP 451  

                   nCkkmKkllrHmnsCKvrkkCkyggCascKqlwqLLrLHskhCkdsnqCp
                   +C++mK +l Hm+ C ++k+C +++Cas++q+++    H+k+C++ + Cp
   pf01047s1   452 HCRTMKNVLNHMTHCQAGKACQVAHCASSRQIIS----HWKNCTRHD-CP 496  

                   Vckcv<-*
                   Vc+++   
   pf01047s1   497 VCLPL    501  

SM00297: domain 1 of 1, from 1152 to 1262: score 158.4, E = 7.1e-43
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      + k+ +  q+l+ +l ++ +++        p + pF++pvd+++Lg+
   pf01047s1  1152    IFKpEELRQALMPTLEALYRQD--------PESLPFRQPVDPQLLGI 1190 

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   PDY+di+k+PMDL+tIk+kl++g+Y+ + + v+D++Lmf+NA+ YN++ s
   pf01047s1  1191 PDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTS 1240 

                   evykdAkkLeklfeeklkelpp<-*
                    vyk+  kL ++fe++++ +++   
   pf01047s1  1241 RVYKFCSKLAEVFEQEIDPVMQ    1262 

SM00291: domain 1 of 1, from 1769 to 1810: score 66.0, E = 4.8e-15
                   *->vhhsvsCdgCgkepivgvRYkClvCpDYDLCesCfakGghhgeHam<
                      ++++++C+ C++  +v++R++C+vC+DYDLC++C+++  +++ H+m 
   pf01047s1  1769    DRFVYTCNECKH--HVETRWHCTVCEDYDLCINCYNT--KSHAHKM  1810 

                   -*
                     
   pf01047s1     -    -    

SM00551: domain 2 of 2, from 1834 to 1912: score 115.3, E = 7e-30
                   *->ptrykqiqrqLelLlHArrdGCrarepenreaAaknqPapHakCqyp
                      ++r+++iqr++  L+HA++  Cr                  a+C++p
   pf01047s1  1834    ESRRLSIQRCIQSLVHACQ--CRN-----------------ANCSLP 1861 

                   nCkkmKkllrHmnsCKvrkkCkyggCascKqlwqLLrLHskhCkdsnqCp
                   +C kmK++++H+++CK     ++ggC+ cKql++L+++H+khC++ + Cp
   pf01047s1  1862 SCQKMKRVVQHTKGCKRK---TNGGCPVCKQLIALCCYHAKHCQENK-CP 1907 

                   Vckcv<-*
                   V++c+   
   pf01047s1  1908 VPFCL    1912 

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